Merge pull request #1387 from mskcc/feature/chip_var_update

Update input_template.json.jinja2
mskcc · Dec 12, 2024 · 1bafd34 · 1bafd34
2 parents 1f81e33 + 65c8b2c
commit 1bafd34
Showing 1 changed file with 3 additions and 3 deletions.
diff --git a/runner/operator/cmo_ch/v2_1_0/chip_var/input_template.json.jinja2 b/runner/operator/cmo_ch/v2_1_0/chip_var/input_template.json.jinja2
@@ -53,15 +53,15 @@
   },
   "input_47kchpd_tsv_file": {
     "class": "File",
-	  "path": "juno:///work/cch/production/resources/ch_47k_impact/versions/v1/chpd47k_prevalence.tsv"
+	  "location": "juno:///work/cch/production/resources/ch_47k_impact/versions/v1/chpd47k_prevalence.tsv"
   },
   "input_panmeloid_tsv_file": {
     "class": "File",
-	  "path": "juno:///work/cch/production/resources/pan_myeloid/versions/v1/pan_myeloid_variant_count.tsv"
+	  "location": "juno:///work/cch/production/resources/pan_myeloid/versions/v1/pan_myeloid_variant_count.tsv"
   },
   "input_hotspot_tsv_file": {
     "class": "File",
-    "path": "juno:///work/cch/production/resources/ch_47k_impact/versions/v1/hotspots_47kchpd.tsv"
+    "location": "juno:///work/cch/production/resources/ch_47k_impact/versions/v1/hotspots_47kchpd.tsv"
   },
   "retain_info": "CNT,TUMOR_TYPE",
   "vardict_allele_frequency_threshold": 0,