Link project to sample #1
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dmcmanam
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May 5, 2022
dmcmanam
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May 5, 2022
LinkProjectToSamples.py
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| # step 1 get project ID as input, query from db to get fastq list eg :http://delphi.mskcc.org:8080/ngs-stats/permissions/getRequestPermissions/13117_B | ||
| # step 2 create symbol links eg: ln -sf /igo/delivery/FASTQ/RUTH_0089_AHHLYJDSX3/Project_13117_B/Sample_HCTWT1_IGO_13117_B_1 /igo/delivery/share/bakhoums/Project_13117_B/RUTH_0089 | ||
| # step 3 call setaccess | ||
| def main(): |
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Can we change the function signature to take the project as an argument? Then it will be ready to call from the crontab.
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