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57 Open 1,044 Closed
57 Open 1,044 Closed
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Issues list

cfDNA samples that need relabeling
#1411 opened Feb 19, 2025 by ao508
cfDNA samples not being assigned correct sample type abbreviation [tweak logic] CMO ID Generation discussion Bring issue up for discussion.
#1407 opened Feb 14, 2025 by ao508
1
Update the TEMPO sample schema with new fields TEMPO-cBio Pipeline
#1405 opened Feb 13, 2025 by qu8n
1
[data] Find and report samples that are linked to more than one patient
#1402 opened Feb 11, 2025 by ao508
Create a Datadog alert when we reject sending a TEMPO sample to cBioPortal TEMPO-cBio Pipeline
#1399 opened Feb 7, 2025 by qu8n
Resolve samples found on cBioPortal but not on SMILE
#1397 opened Feb 6, 2025 by qu8n
SMILE dashboard to get TEMPO model data from database instead of calculating on the fly TEMPO-cBio Pipeline
#1387 opened Jan 29, 2025 by ao508
1
Tempo model updates TEMPO-cBio Pipeline
#1385 opened Jan 29, 2025 by ao508
1
Update script that resolves duplicate patients to handle more complex cases
#1379 opened Jan 23, 2025 by qu8n
Adjust neo4j transactions to also rollback patient nodes created when a sample fails to import SMILE Server Development
#1372 opened Jan 9, 2025 by ao508
1
Can we repurpose the comments field in sample metadata for logging changes made to data/labels. Dashboard Development
#1368 opened Jan 8, 2025 by ao508
[smile-server] monitor changes/updates to embargo date for tempo-cbio pipeline TEMPO-cBio Pipeline
#1354 opened Dec 18, 2024 by ao508
1
TEMPO-cBio pipeline Epic TEMPO-cBio Pipeline
#1344 opened Dec 4, 2024 by ao508
Look into SMILE CRDB crosswalk table mappings discussion Bring issue up for discussion. external-dependencies
#1325 opened Nov 15, 2024 by ao508
Move 12-245 Part A/C consent status to patient-level metadata neo4j SMILE Server Development
#1271 opened Sep 4, 2024 by ao508
1
Add new pub-sub topic for dbGap updates dbGaP NATS Server Administration
#1209 opened Jun 26, 2024 by ao508
1
Add message handler in SMILE server for incoming dbGap sample updates. dbGaP SMILE Server Development
#1208 opened Jun 26, 2024 by ao508
Make dbGap info editable on SMILE dashboard (and push update to SMILE) Dashboard Development dbGaP
#1207 opened Jun 26, 2024 by ao508
Backfill existing dbGap sample data. dbGaP
#1206 opened Jun 26, 2024 by ao508
[dashboard] Export data from dbGap view into phenotype file format Dashboard Development dbGaP
#1205 opened Jun 26, 2024 by ao508
Display dbGap study in sample view and add dbGap tab Dashboard Development dbGaP
#1198 opened Jun 20, 2024 by ao508
[smile-server] Update db schema with dbGaP node/relationship dbGaP discussion Bring issue up for discussion. SMILE Server Development
#1197 opened Jun 20, 2024 by ao508
dbGaP Submission Tracking in SMILE dbGaP Epic
#1188 opened Jun 12, 2024 by ao508
Using SMILE to assemble phenotype files needed for dbGaP submission dbGaP
#1187 opened Jun 12, 2024 by ao508
dbGaP submission tracking in SMILE dbGaP
#1185 opened Jun 12, 2024 by ao508
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