0.1.0
Pre-release
Pre-release
CHANGELOG:
make_bam_and_qc.nf script (bwa-mem, samtools view, samtools sort, gatk markduplicates, gatk baserecalibrator, gatk applybqsr)
somatic.nf script (delly call, delly filter, snppileup, facets, manta, strelka, mutect2)
config files for aws and lsf (juno)