InteractiveSCRE.py is outdated/broken

[vvoelz]

I'm trying to get this script to work, and found a few problems. Here are proposed solutions:
(1) the first few lines have outdated variable names (CamelCaps) and routines. They should be replaced with MSMLib.build_msm()
(2) SCRE.ConvertTIntoK() expects a (dense?) numpy array. Seems to work by removing this, although this may mess with the routines in SCRE?

[kyleabeauchamp]

Really, I'm not sure if that's part of the recommended pipeline for most applications anyway.

[kyleabeauchamp]

E.g. SCRE is not currently slated for porting to MSMB3