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Issues: msmbuilder/msmbuilder-legacy

52 Open 241 Closed
52 Open 241 Closed
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Issues list

Question:How to remove disconnected microstates in MSMbuilder?
#459 opened Jun 8, 2015 by zhoushuangyan
InteractiveSCRE.py is outdated/broken
#451 opened Nov 20, 2014 by vvoelz
2
SaveRawStructure.py into msmbuilder 2.8
#447 opened Oct 25, 2014 by sryckbos
1
Bug in BACE_Coarse_Graining.py?
#446 opened Oct 21, 2014 by rosmarin
SaveStructures ignores boolean argument --replacement
#444 opened Oct 15, 2014 by Trayder
What are the units of distance in dihedral clustering? docs
#443 opened Oct 8, 2014 by vvoelz
2
PCCA contains deprecated method
#442 opened Sep 24, 2014 by Zsailer
Clustering by contacts fails with varying errors
#441 opened Sep 16, 2014 by Trayder
Human readable Assignments.h5
#438 opened Sep 9, 2014 by chelino85
2
travis failing
#437 opened Sep 8, 2014 by schwancr
1
entry_point() in script creates a limbo for untested code
#436 opened Sep 8, 2014 by schwancr
Chapman-Kolmogorov
#434 opened Sep 8, 2014 by chelino85
1
Bootstrapping on Implied Timescales
#432 opened Aug 25, 2014 by s-gordon
1
msm_analysis.sample input matrix types
#430 opened Jul 16, 2014 by apeck12
Using list of states in a file as an input for SaveStructures
#426 opened Jun 17, 2014 by diwakarshukla
CalculateImpliedTimescales.py: Abnormal termination of BFGS likelihood maximization. Error code 2
#425 opened Jun 12, 2014 by davidshorthouse
2
Use RMSD clustering without alignment?
#424 opened Jun 5, 2014 by alexrd
CalculateImpliedTimeScale failed with "k must be between 1 and ndim(A)-1"
#420 opened May 25, 2014 by Serilin
4
Pairwise RMSD of a Macro-state MSM network
#418 opened May 20, 2014 by daviddaileo
8
Section headers don't look like headers in Sphinx theme
#413 opened May 6, 2014 by kyleabeauchamp
2
problem about ConvertDataToHDF.py command
#410 opened Apr 16, 2014 by smileyujun
CreateAtomIndices.py doesn't recognize residue name CYM (deprotonated cysteine)
#409 opened Apr 15, 2014 by sryckbos
1
Confusing percentages printed in BuildMSM.py
#404 opened Apr 3, 2014 by dvanatta
3
Copyright should be updated to 2014
#403 opened Apr 3, 2014 by jimsnyderjr
Feature request: separate alignment and rmsd
#399 opened Apr 2, 2014 by gbowman
4
ProTip! Exclude everything labeled bug with -label:bug.