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MSMExplorer 1.1.0

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@cxhernandez cxhernandez released this 05 Jan 18:08
· 18 commits to master since this release
1.1.0
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Learn about vigilant mode.

We're pleased to announce the release of MSMExplorer v1.1.0. This
includes a number of new plots and minor improvements.

New Features


- Added a new function ``plot_stackdist`` that plots stacked distributions
  (a.k.a joy plots) of data (#102).

- Added a new function ``plot_implied_timescales`` that accepts a list of msm objects
  calculated at different lag times. Returns an implied timescales plot (#90).

- ``plot_free_energy`` now accepts a ``return_data`` flag that will return
  the data used for the free energy plot(#78).

- Added a new function ``plot_trace2d`` that plots the time evolution of a 2D numpy array
  using a colorbar to map the time (#108).

- Added a new function ``plot_decomp_grid`` that projects a 1D decomposition
onto a 2D grid (#115).

Improvements

  • vmin in plot_free_energy is now set to 1E-12 unless otherwise specialized.

  • Add plot_implied_timescales example to the Fs-Peptide-Example.ipynb notebook. Also added some minor
    clarifications and explanations (#107).

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