Merge pull request #281 from rmodrak/master

graphics/waveforms.py refactoring

.github/workflows/python-app.yaml

@@ -42,6 +42,9 @@ jobs:
          python tests/test_grid_search_mt_depth.py --no_figures
          python tests/test_greens_SPECFEM3D_SAC.py --no_figures
          python tests/test_time_shifts.py --no_figures
+    - name: Graphics
+      run: |
+         python tests/test_graphics.py
 
     # unfortunately, these Conda installation tests exceed the resource limits
     # for GitHub workflows

README.md

@@ -1,63 +1,63 @@
 # mtuq
 
-[![Build Status](https://github.com/uafgeotools/mtuq/actions/workflows/python-app.yaml/badge.svg)](https://github.com/rmodrak/mtuq/blob/master/.github/workflows/python-app.yaml)
+[![Build Status](https://github.com/mtuqorg/mtuq/actions/workflows/python-app.yaml/badge.svg)](https://github.com/rmodrak/mtuq/blob/master/.github/workflows/python-app.yaml)
 [![SCOPED](https://img.shields.io/endpoint?url=https://runkit.io/wangyinz/scoped/branches/master/MTUQ)](https://github.com/SeisSCOPED/container/pkgs/container/MTUQ)
 
 MTUQ provides *m*oment *t*ensor estimates and *u*ncertainty *q*uantification from broadband seismic data.  
 
 
 ## Getting started
 
-[Installation](https://uafgeotools.github.io/mtuq/install/index.html)
+[Installation](https://mtuqorg.github.io/mtuq/install/index.html)
 
-[Quick start](https://uafgeotools.github.io/mtuq/quick_start.html)
+[Quick start](https://mtuqorg.github.io/mtuq/quick_start.html)
 
 
 
 ## Documentation
 
-[Acquiring seismic data](https://uafgeotools.github.io/mtuq/user_guide/02.html)
+[Acquiring seismic data](https://mtuqorg.github.io/mtuq/user_guide/02.html)
 
-[Acquiring Green's functions](https://uafgeotools.github.io/mtuq/user_guide/03.html)
+[Acquiring Green's functions](https://mtuqorg.github.io/mtuq/user_guide/03.html)
 
-[Data processing](https://uafgeotools.github.io/mtuq/user_guide/04.html)
+[Data processing](https://mtuqorg.github.io/mtuq/user_guide/04.html)
 
-[Visualization galleries](https://uafgeotools.github.io/mtuq/user_guide/05.html)
+[Visualization galleries](https://mtuqorg.github.io/mtuq/user_guide/05.html)
 
-[Library reference](https://uafgeotools.github.io/mtuq/library/index.html)
+[Library reference](https://mtuqorg.github.io/mtuq/library/index.html)
 
 
 ## Highlights
 
-Common use cases include [double couple moment tensor](https://github.com/uafgeotools/mtuq/blob/master/examples/SerialGridSearch.DoubleCouple.py), [full moment tensor](https://github.com/uafgeotools/mtuq/blob/master/examples/GridSearch.FullMomentTensor.py), [depth](https://github.com/rmodrak/mtuq/blob/master/examples/GridSearch.DoubleCouple%2BMagnitude%2BDepth.py) and [hypocenter](https://github.com/rmodrak/mtuq/blob/master/examples/GridSearch.DoubleCouple%2BMagnitude%2BHypocenter.py) uncertainty analysis.  Applications involving composite sources, force sources, constrained moment tensor sources, source-time functions, and other source parameters are also possible.
+Common use cases include [double couple moment tensor](https://github.com/mtuqorg/mtuq/blob/master/examples/SerialGridSearch.DoubleCouple.py), [full moment tensor](https://github.com/mtuqorg/mtuq/blob/master/examples/GridSearch.FullMomentTensor.py), [depth](https://github.com/rmodrak/mtuq/blob/master/examples/GridSearch.DoubleCouple%2BMagnitude%2BDepth.py) and [hypocenter](https://github.com/rmodrak/mtuq/blob/master/examples/GridSearch.DoubleCouple%2BMagnitude%2BHypocenter.py) uncertainty analysis.  Applications involving composite sources, force sources, constrained moment tensor sources, source-time functions, and other source parameters are also possible.
 
 
 ### Solver interfaces
 
-[I/O functions](https://uafgeotools.github.io/mtuq/library/index.html#data-i-o)
+[I/O functions](https://mtuqorg.github.io/mtuq/library/index.html#data-i-o)
 are included for reading AxiSEM, SPECFEM3D, and FK Green's functions as well as
 downloading Green's functions from remote [syngine](http://ds.iris.edu/ds/products/syngine/) databases.
 
 
 
 ### Misfit evaluation
 
-Waveform difference and cross-correlation time-shift [misfit evaluation](https://uafgeotools.github.io/mtuq/library/index.html#data-processing-and-inversion)
+Waveform difference and cross-correlation time-shift [misfit evaluation](https://mtuqorg.github.io/mtuq/library/index.html#data-processing-and-inversion)
 on body-wave and surface-wave windows is implemented in C-accelerated Python.
 
-These misfit functions can be used with [mtuq.grid_search](https://uafgeotools.github.io/mtuq/library/generated/mtuq.grid_search.grid_search.html), which automatically partitions the grid over multiple MPI processes if invoked from an MPI environment.  For efficient and unbiased uncertainty quantification, [uniform grids](https://uafgeotools.github.io/mtuq/library/index.html#moment-tensor-and-force-grids) can be used for the grid search, drawing from [Tape2015](https://academic.oup.com/gji/article/202/3/2074/613765).
+These misfit functions can be used with [mtuq.grid_search](https://mtuqorg.github.io/mtuq/library/generated/mtuq.grid_search.grid_search.html), which automatically partitions the grid over multiple MPI processes if invoked from an MPI environment.  For efficient and unbiased uncertainty quantification, [uniform grids](https://mtuqorg.github.io/mtuq/library/index.html#moment-tensor-and-force-grids) can be used for the grid search, drawing from [Tape2015](https://academic.oup.com/gji/article/202/3/2074/613765).
 
 Alternatively, MTUQ misfit functions can be used as a starting point for Bayesian uncertainty quantification using pymc or other MCMC libraries.
 
 
 ### Visualization
 
-[Visualization utilities](https://uafgeotools.github.io/mtuq/user_guide/05/gallery_mt.html) are included for both the [eigenvalue lune](https://onlinelibrary.wiley.com/doi/10.1111/j.1365-246X.2012.05491.x) and [v,w rectangle](https://academic.oup.com/gji/article/202/3/2074/613765), with matplotlib and Generic Mapping Tools graphics backends.
+[Visualization utilities](https://mtuqorg.github.io/mtuq/user_guide/05/gallery_mt.html) are included for both the [eigenvalue lune](https://onlinelibrary.wiley.com/doi/10.1111/j.1365-246X.2012.05491.x) and [v,w rectangle](https://academic.oup.com/gji/article/202/3/2074/613765), with matplotlib and Generic Mapping Tools graphics backends.
 
 
 ### Testing
 
-The package has been tested against [legacy Perl/C codes](https://github.com/uafgeotools/mtuq/blob/master/tests/benchmark_cap_vs_mtuq.py) as well as [published studies](https://github.com/rmodrak/mtbench).
+The package has been tested against [legacy Perl/C codes](https://github.com/mtuqorg/mtuq/blob/master/tests/benchmark_cap_vs_mtuq.py) as well as [published studies](https://github.com/rmodrak/mtbench).