v1.0.3

New Features:

Cell Adjacency Matrix + Plot
Quality Measurements (Json)
Segmentation Evaluation Pipeline Integration
TSNE + Texture Features
Bug Fixes:

Fixed non sequential cell indexes
Nonsensical values for metrics
Nomenclature for files
Improvements:

Convert PNGs to PDFs (no longer vector graphic)
Runtime Improvement (Parallelization)
Refactor Code (more pythonic)

v1.0.2

Fixed bugs:

• Naming convention (cells -> cell)
• cell irregularities/edge cases and cw orientation of cell polygons

v1.0

• Compatible for IMS images by process of reallocation.
• Added additional clustering of all channels in an image's mask (nucleus, cell boundary, nucleus boundary).
• Texture calculation of every cell (turned off due to runtime).
• Upsampled resolutions of PNGs.
• Automated clustering by silhouette scoring to find best number of cluster to use.
• Added normalization to image and only process interior cells.
• Include summary files update to all images in a single run.
• Fixed bugs in OutlinePCA that was not producing correct orientation of cells.
• Increased runtime efficiency