Merge pull request #241 from mwang87/parquet-output #473

	# This workflow will install Python dependencies, run tests and lint with a single version of Python
	# For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions

	name: NF Workflow Testing

	on:
	push:
	branches: [ master ]
	pull_request:
	branches: [ master ]

	jobs:
	nextflow-test:

	runs-on: ubuntu-latest

	steps:
	- uses: actions/checkout@v2
	#- name: Set up Python 3.9
	# uses: actions/setup-python@v2
	# with:
	# python-version: 3.9
	- name: Install dependencies
	run: \|
	#python -m pip install --upgrade pip
	#pip install flake8 pytest
	#if [ -f requirements.txt ]; then pip install -r requirements.txt; fi
	wget -qO- get.nextflow.io \| bash
	sudo mv nextflow /usr/local/bin/
	- name: Download Data
	run: \|
	cd tests && sh ./get_data.sh && cd ..
	- name: Workflow Testing
	run: \|
	cd workflow
	make run_test
	make run_test_no_extract

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