Merge pull request #40 from mxochicale/39-feb2025

39 - feb2025

.github/workflows/cv-two-pages.yml

@@ -21,6 +21,7 @@ on:
       - 33-sep2023
       - 35-feb2024
       - 37-aug2024
+      - 39-feb2025
 
 jobs:
   build:

README.md

@@ -1,16 +1,33 @@
-# :scroll: My Curriculum Vitae (August 2024)
+# :scroll: My Curriculum Vitae (Feb 2024)
 
 [![GitHub Actions Status](https://github.com/mxochicale/cv/workflows/CICV2P/badge.svg)](https://github.com/mxochicale/cv/actions) [![CV](https://img.shields.io/badge/read_my-CV-blue.svg)](https://github.com/mxochicale/cv/blob/generated-pdfs/cv-two-pages.pdf)
 
 My Curriculum Vitae (CV) is written in LaTeX and it is built locally in Ubuntu 22.04x64 OS with [texlive](https://github.com/mxochicale/latex/tree/master/installation) and remotely with [github action CI](https://github.com/free-cortex/framework/tree/main/workflow). 
-Refer to [README](tex/README.md) for detailed instructions on local and remote latex built. 
+Refer to [README](tex/README.md) for detailed instructions on local and remote latex build.
 
 ## My CV
 Download my latest CV by clicking on the following pages.
 
 [<img src="docs/page-0.png" width="400">](https://github.com/mxochicale/cv/blob/generated-pdfs/cv-two-pages.pdf)
 [<img src="docs/page-1.png" width="400">](https://github.com/mxochicale/cv/blob/generated-pdfs/cv-two-pages.pdf)
 
+
+## Build CV locally
+Open a terminal to build cv locally
+```bash
+cd $HOME/repositories/mxochicale/cv/tex
+bash localbuilt.sh TwoPages 
+make clean #clean project
+```
+For further details see [here](tex)
+
+## Commit and push changes
+```bash
+git add .
+git commit -m ':tada: version monthYEAR is ready CICV2P #0'
+git push oring <FEATURE_BRANCH>
+```
+
 ## Clone repository
 After generating your SSH keys as suggested [here](https://docs.github.com/en/github/authenticating-to-github/generating-a-new-ssh-key-and-adding-it-to-the-ssh-agent) or [here](https://github.com/mxochicale/tools/blob/main/github/SSH.md).
 You can then clone the repository by typing (or copying) the following line in a terminal at your selected path in your machine:

docs/pdf2png.bash

@@ -5,7 +5,7 @@
 # References 
 # https://superuser.com/questions/185880/how-to-convert-a-pdf-document-to-png
 
-#wget https://github.com/mxochicale/cv/raw/generated-pdfs/cv-two-pages.pdf
+sudo apt-get install -y imagemagick
 cp ../tex/cv-two-pages.pdf .
 
 mv cv-two-pages.pdf input.pdf

tex/README.md

@@ -2,22 +2,25 @@
 
 ## tex built with texlive
 Open terminal and run:
-```
+```bash
 cd $HOME/repositories/mxochicale/cv/tex
 bash localbuilt.sh TwoPages 
 bash localbuilt.sh NPages 
 ```
 to clean project, then type:
-```
+```bash
 make clean
 ```
 
 ## tex built with github action 
 1. Edit .github/worflows/cv-two-pages.yml and add branch name.
+```
+vim .github/workflows/cv-two-pages.yml
+```
 
 2. To make use of the CI tex build, please make use of "CICV2P" in the commit message: 
 ```
-git commit -m ':tada: version monthYEAR is ready CICV2P (#0)'
+git commit -m ':tada: version monthYEAR is ready CICV2P #0'
 ```
 
 For further details, please follow this [instructions](https://github.com/free-cortex/framework/tree/main/workflow) to set up github action.

tex/cv-two-pages.tex

@@ -2,7 +2,7 @@
 
 \name{Miguel Xochicale}
 \researchinterest{
-\\ My research interests focus on advancing real-time AI tools for MedTech, SurgTech, biomechanics, and clinical translation.
+\\ My research interests focus on advancing real-time AI tools for MedTech, SurgTech, Biomechanics, and clinical translation.
 }
 
 \address{
@@ -62,11 +62,12 @@ \subsection{M.Sc. in Signal Processing at Institute of Astrophysics, Optics and
 
 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
 \section{Research Experience}
-\subsection{Senior Research Engineer at University College London, UK}[Oct 2022~--~Present]
+\subsection{Senior Research Software Engineer at University College London, UK}[Oct 2022~--~Present]
 \begin{itemize}
   \item 
-I am advancing real-time AI-enabled surgical tools by developing end-to-end frameworks, including training, inference, API design, and deployment to medical devices \href{https://mxochicale.github.io/real-time-ai-for-surgery-with-NVIDIA-Holoscan-platform/#/section}{\faExternalLink*}.
-Additionally, I contribute to elevating the highest standards of code quality in UCL's open-source software projects (\href{https://github.com/UCLH-Foundry/PIXL}{PIXL \faGithub*} \& \href{https://github.com/SciKit-Surgery}{SciKit-Surgery \faGithub*}).
+I am advancing real-time AI-enabled tools by developing end-to-end frameworks that encompass model training, efficient inference, robust API design, and seamless deployment to medical devices, ensuring scalablity and clinical applicability \href{https://mxochicale.github.io/real-time-ai-for-surgery-with-NVIDIA-Holoscan-platform/#/section}{\faExternalLink*}.
+Additionally, I empower innovators to progress from idea to research to production by ensuring the highest standards of code quality in UCL's open-source software projects (\href{https://github.com/UCL-CDI/cdi-hub}{CDI-HUB \faGithub*}, \href{https://github.com/UCLH-Foundry/PIXL}{PIXL \faGithub*} \& \href{https://github.com/SciKit-Surgery}{SciKit-Surgery \faGithub*}).
+
   %\item Collaborators: \href{https://scholar.google.co.uk/citations?user=-rD4cJIAAAAJ}{Stephen Thompson} and \href{https://iris.ucl.ac.uk/iris/browse/profile?upi=MJCLA42}{Prof Matt Clarkson}
 %Additionally, I am leading the preparation of one proceeding and one manuscript in the area of medical imaging with real-time deep learning techniques.
 %All previous activities in collaboration with renowned clinicians and engineers in KCL, University of Oxford and University of Melbourne. 
@@ -149,18 +150,24 @@ \subsection{Research Associate in Software and Hardware Engineering at King's Co
 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
 \section{Publications}
 \publications{publications.bib}
+See more full list of publications and associated links \href{https://github.com/mxochicale/cv/blob/main/tex/publications.bib}{(\faExternalLink*)}.
+
 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
 \section{Talks, Posters and Workshops}
 \publications{talks-and-posters.bib}
-%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
-
+See more full list of references and associated links \href{https://github.com/mxochicale/cv/blob/main/tex/talks-and-posters.bib}{(\faExternalLink*)}.
 
 
 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
 \section{Supervision and Teaching Experience}
 
 \subsection{University College London}[Jan 2023~--~Present]
 \begin{itemize}
+
+	\item Co-supervision of PhD student Elvira Cortese from the UCL Queen Square Institute of Neurology
+			%\textit{Project: }
+		\printdate{Oct 24'~--~Sep 27'}
+
 	\item Supervision: Sujon Hekim, in2reserach summer placement
 			\textit{Project: AI-based surgical skill assessment using transformer model.}
 		\printdate{June 23'~--~Sep 23'}
@@ -172,8 +179,9 @@ \subsection{University College London}[Jan 2023~--~Present]
 		\textit{Project: Fetal Brain Ultrasound Imaging synthesis with diffusion models.}
 		\printdate{May 23'~--~Aug 23'}
 
-	\item Teaching Associate: AI in Healthcare Group project. Lecturer: Prof. Paul Taylor \printdate{Jan 23'~--~March 23'}
-	\\ I led two group projects on \textit{Fetal Brain Ultrasound Imaging Synthesis with Diffusion Models.}
+	\item Technical Lead: CHME0039: Artificial Intelligence in Healthcare Group Project. Lecturers: Prof. Paul Taylor and Dr Kevin Tsang
+	\\ I led two group projects on \textit{Fetal Brain Ultrasound Imaging Synthesis with Diffusion Models.} \printdate{Jan 23'~--~March 23'}
+	\\ I led two group projects on \textit{End-to-End AI Workflow for Automated Multimodal Medical Image Reporting (AMMIR).} \printdate{Jan 25'~--~March 25'}
 
 \end{itemize}
 
@@ -368,6 +376,7 @@ \section{Skills}
 CUDA Programming [2021-present], 
 Docker [2024-present], \&
 python-based linting [2022-present].
+aws-cli \href{https://github.com/UCL-CDI/cdi-hub/tree/main/tutorials/aws-services/aws-batch}{\faGithub*} [Oct2024-present].
 
 \item[Tools and hardware] 
 Single-board computers and microcontrollers (NVIDIA Jetson Nano, RaspberryPi, BeagleBone, Arduino \& PIC)[2010-present],
@@ -404,6 +413,12 @@ \section{Outreach activities and scientific engagement}
 %  \entry{Outreach activities and scientific engagement}{Sep 2019~--~Present}
 %\end{positions}
 \begin{itemize}
+
+\item Lead organiser of HAWKESHACKS3 hackathon "Redefining Eye Tracking with Open-Source Real-Time AI Solutions":
+	Site: \href{https://cmic-ucl.github.io/CMICHACKS/}{\faExternalLink*}, \&
+	GitHub: \href{https://github.com/oocular/ready/tree/main/docs/hackathons/hawkes2024}{\faGithub*}.
+	\printdate{6-8th Nov 25'}.
+
 \item Lead organiser of "Open-Source Software for SurgTech 2" at the Hamlym Symp. on Medical Robotics 2024.
 	\href{https://www.hamlynsymposium.org/events/open-source-software-for-surgical-technologies-2/}{\faExternalLink*}.
 	\printdate{Jan 24' -- Oct 25'}.

tex/publications.bib

@@ -1,4 +1,34 @@
 
+
+@article{https://doi.org/10.1049/htl2.12101,
+author = {Das, Adrito and 
+	Sidiqi, Bilal and 
+	Mennillo, Laurent and 
+	Mao, Zhehua and 
+	Brudfors, Mikael and 
+	Xochicale, Miguel and 
+	Khan, Danyal Z. and 
+	Newall, Nicola and 
+	Hanrahan, John G. and 
+	Clarkson, Matthew J. and 
+	Stoyanov, Danail and 
+	Marcus, Hani J. and 
+	Bano, Sophia},
+author+an = {6=highlight},
+title = {Automated surgical skill assessment in endoscopic pituitary surgery using real-time instrument tracking on a high-fidelity bench-top phantom},
+journal = {Healthcare Technology Letters},
+volume = {11},
+number = {6},
+pages = {336-344},
+keywords = {artificial intelligence, instrument segmentation, machine learning, minimally invasive surgery, neurosurgery},
+doi = {https://doi.org/10.1049/htl2.12101},
+url = {https://ietresearch.onlinelibrary.wiley.com/doi/abs/10.1049/htl2.12101},
+eprint = {https://ietresearch.onlinelibrary.wiley.com/doi/pdf/10.1049/htl2.12101},
+year = {2024}
+}
+
+
+
 @article{thompson2023using,
   title={Using SciKit-Surgery for Augmented Reality in Surgery Research},
   author={Thompson, Stephen and 
@@ -341,7 +371,7 @@ @inproceedings{montenegro2021air4children
       url = {https://github.com/air4children/hri2021}
 }
 
-@inproceedings{HAI2017:movvar,
+%@inproceedings{HAI2017:movvar,
 	author = {Xochicale, Miguel 
 		and Baber, Chris},
 	author+an = {1=highlight},
@@ -356,7 +386,7 @@ @inproceedings{HAI2017:movvar
 	address =      {Bielefeld, Germany}
 }
 
-@inproceedings{HRI2017:hri-imitation,
+%@inproceedings{HRI2017:hri-imitation,
 	author = {Xochicale, Miguel 
 		and Baber, Chris
 		and Oussalah Mourad},
@@ -372,7 +402,7 @@ @inproceedings{HRI2017:hri-imitation
 	address =      {Vienna, Austria}
 }
 
-@inproceedings{WEROB2016:movvar-dance,
+%@inproceedings{WEROB2016:movvar-dance,
 	author = {Xochicale, Miguel 
 		and Baber, Chris
 		and Oussalah Mourad},
@@ -388,7 +418,7 @@ @inproceedings{WEROB2016:movvar-dance
   	address =      {Segovia, Spain}
 }
 
-@inproceedings{DERBIS2016:movvar-gestures,
+%@inproceedings{DERBIS2016:movvar-gestures,
 	author = {Xochicale, Miguel 
 		and Baber, Chris
 		and Oussalah Mourad},
@@ -405,16 +435,16 @@ @inproceedings{DERBIS2016:movvar-gestures
 }
 
 %@inproceedings{ICED2006:narrow-band-filters,
-%	author = {Xochicale, Miguel 
-%		and Jovanovic-Dolecek, G},
-%	author+an = {1=highlight},
-%	title  = {A New Method for Design Narrow Band Lowpass FIR Filters Using a Scale Function},
-%    	url = {https://github.com/mxochicale/publications/tree/master/2006/Iced},
-%	eprint_url = {https://github.com/mxochicale/publications/blob/master/2006/Iced/article/MPXochicale_GJovanovic-Dolecek-2006.pdf},
-%	addendum = {Conference Paper},
-%    	booktitle = {2nd International Conference on Electronic Design (\textbf{ICED '06})},
-%	month =   {11},
-%	year = {2006},
-%  	address =      {Veracruz, Mexico}
-%}
+	author = {Xochicale, Miguel 
+		and Jovanovic-Dolecek, G},
+	author+an = {1=highlight},
+	title  = {A New Method for Design Narrow Band Lowpass FIR Filters Using a Scale Function},
+   	url = {https://github.com/mxochicale/publications/tree/master/2006/Iced},
+	eprint_url = {https://github.com/mxochicale/publications/blob/master/2006/Iced/article/MPXochicale_GJovanovic-Dolecek-2006.pdf},
+	addendum = {Conference Paper},
+    	booktitle = {2nd International Conference on Electronic Design (\textbf{ICED '06})},
+	month =   {11},
+	year = {2006},
+  	address =      {Veracruz, Mexico}
+}
 

tex/talks-and-posters.bib

@@ -1,6 +1,25 @@
 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
 %%%               TALKS
+%%%
+@inproceedings{fosdem2025,
+	author       	= {
+			Xochicale, Miguel
+			},
+	author+an 	= {1=highlight},
+	title        	= {How Open-Source Software is Shaping the Future of Healthcare},
+	addendum 	= {Presentation, Abstract},
+	doi		= {},
+	url 		= {https://fosdem.org/2025/schedule/event/fosdem-2025-5196-how-open-source-software-is-shaping-the-future-of-healthcare},
+	day        	= {01},
+	month        	= {02},
+	year         	= {2025},
+	address 	= {Free and Open source Software Developers' European Meeting (FOSDEM)}
+}
+
+https://fosdem.org/2025/schedule/event/fosdem-2025-5196-how-open-source-software-is-shaping-the-future-of-healthcare/
+
+
 @inproceedings{fastML4S:2023:rtt4ssa,
 	author       	= {
 			Hekim, Sujon and
@@ -111,7 +130,7 @@ @inproceedings{ICDEA2019:movvar-hri
 	address =      {London, UK}
 }
  
-@inproceedings{ECCC2018:chaos-movement-variability,
+%@inproceedings{ECCC2018:chaos-movement-variability,
 	author = {Xochicale, Miguel},
 	author+an = {1=highlight},
 	title  = {Quantifying the Inherent Chaos of Human Movement Variability},
@@ -125,7 +144,7 @@ @inproceedings{ECCC2018:chaos-movement-variability
   	address =      {Madrid, Spain}
 }
 
-@inproceedings{CERE2018:movvariability-in-facial-expresions,
+%@inproceedings{CERE2018:movvariability-in-facial-expresions,
 	author = {Xochicale, Miguel 
 		and Baber, Chris},
 	author+an = {1=highlight},