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Finished interfaces for demo. Tried to integrate chatbot within. Curr…
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…ently I am telling the user to open Microsoft Copilot instead.
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@fabioacl
fabioacl committed Dec 10, 2024
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222 changes: 222 additions & 0 deletions Notebooks/Metadata_Schemas_LinkML/complexMultipleObjects.yaml
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id: https://w3id.org/linkml/examples/materialsML
name: materialsML
prefixes:
linkml: https://w3id.org/linkml/
schema: http://schema.org/
emmo: https://w3id.org/emmo#
emmo_da: http://emmo.info/domain-atomistic#
emmo_nano: http://emmo.info/emmo/nanoind#
emmo_chameo: https://w3id.org/emmo-chameo/chameo#
emmo_electrochemistry: https://w3id.org/emmo/domain/electrochemistry#
fairmat_sts: https://fairmat-nfdi.github.io/nexus_definitions/classes/contributed_definitions/NXsts.html#
ncit: http://purl.obolibrary.org/obo/ncit.owl#
occo: http://purl.obolibrary.org/obo/occo.owl#
chmo: http://purl.obolibrary.org/obo/chmo.owl#
chebi: http://purl.obolibrary.org/obo/chebi.owl#
obi: http://purl.obolibrary.org/obo/obi.owl#
opmi: http://purl.obolibrary.org/obo/opmi.owl#
iao: http://purl.obolibrary.org/obo/iao.owl#
sio: http://semanticscience.org/ontology/sio.owl#
ome_onto: http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#
apollo: http://purl.obolibrary.org/obo/apollo_sv.owl#
afe: http://purl.allotrope.org/ontologies/equipment#
materialsML: https://w3id.org/linkml/examples/materialsML/
xsd: http://www.w3.org/2001/XMLSchema#
foaf: http://xmlns.com/foaf/0.1/
qudt: http://qudt.org/schema/qudt/
unit: http://qudt.org/vocab/unit/
dcat: http://www.w3.org/ns/dcat#
# default_curi_maps:
# - semweb_context
imports:
- linkml:types
default_prefix: materialsML

classes:
Thing:
title: Thing
class_uri: schema:Thing
slots:
- perm_id
- name
- type
slot_usage:
name:
required: true
perm_id:
required: true
annotations:
openbis_object: false
Annealing:
title: Annealing
is_a: Thing
class_uri: chmo:CHMO_0001465
description: Annealing
annotations:
openbis_object: true
openbis_code: ANNEAL
openbis_label: Annealing
slots:
- duration
- pressure
- voltage
- temperature
- current
- comments
- has_instrument
- has_sample
Instrument:
title: Instrument
is_a: Thing
class_uri: ncit:NCIT_C16742
description: Instrument
annotations:
openbis_object: true
openbis_code: INSTR
openbis_label: Instrument
slots:
- serial_number
- empa_id
- documentation_website
- receive_date
- comments
Sample:
title: Sample
is_a: Thing
class_uri:
description: Sample being measured
annotations:
openbis_object: true
openbis_code: SAMP
openbis_label: Sample
slots:
- exists

slots:
exists:
description: exists
range: boolean
multivalued: false
slot_uri:
annotations:
openbis_type: BOOLEAN
openbis_label: Exists
receive_date:
description: received date
range: date
slot_uri: ncit:NCIT_C164590
multivalued: false
annotations:
openbis_type: DATE
openbis_label: Receive date
serial_number:
description: serial number
range: string
slot_uri: ncit:NCIT_C73518
multivalued: false
annotations:
openbis_type: VARCHAR
openbis_label: Serial number
empa_id:
description: empa id
range: string
multivalued: false
annotations:
openbis_type: VARCHAR
openbis_label: Empa ID
documentation_website:
description: documentation website
range: string
pattern: (https?:\/\/(?:www\\.|(?!www))[a-zA-Z0-9][a-zA-Z0-9-]+[a-zA-Z0-9]\\.[^\\s]{2,}|www\\.[a-zA-Z0-9][a-zA-Z0-9-]+[a-zA-Z0-9]\\.[^\\s]{2,}|https?:\/\/(?:www\\.|(?!www))[a-zA-Z0-9]+\\.[^\\s]{2,}|www\\.[a-zA-Z0-9]+\\.[^\\s]{2,})
slot_uri: ncit:NCIT_C93821
multivalued: false
annotations:
openbis_type: HYPERLINK
openbis_label: Documentation website
type:
designates_type: true
range: string
multivalued: false
annotations:
openbis_type: Not used
perm_id:
identifier: true
description: permanent ID
range: string
multivalued: false
slot_uri: schema:identifier
annotations:
openbis_type: Not used
openbis_label: Permanent ID
name:
description: name
range: string
slot_uri: schema:name
multivalued: false
annotations:
openbis_type: VARCHAR
openbis_label: Name
temperature:
description: temperature
range: object
slot_uri: ncit:NCIT_C25206
multivalued: false
annotations:
openbis_type: JSON
openbis_label: Temperature
duration:
description: duration
range: object
slot_uri: ncit:NCIT_C25330
multivalued: false
annotations:
openbis_type: JSON
openbis_label: Duration
pressure:
description: pressure
range: object
slot_uri: emmo:EMMO_50a44256_9dc5_434b_bad4_74a4d9a29989
multivalued: false
annotations:
openbis_type: JSON
openbis_label: Pressure
voltage:
description: voltage
range: object
slot_uri: emmo:EMMO_4f2d3939_91b1_4001_b8ab_7d19074bf845
multivalued: false
annotations:
openbis_type: JSON
openbis_label: Voltage
current:
description: current
range: object
slot_uri: emmo:EMMO_c995ae70_3b84_4ebb_bcfc_69e6a281bb88
multivalued: false
annotations:
openbis_type: JSON
openbis_label: Current
comments:
description: comments
range: string
slot_uri: schema:comment
multivalued: false
annotations:
openbis_type: MULTILINE_VARCHAR
openbis_label: Comments
has_instrument:
range: Instrument
description: instrument
multivalued: false
slot_uri:
annotations:
openbis_type: OBJECT (PARENT)
openbis_label: Instrument
has_sample:
range: Sample
description: sample
inlined: true
multivalued: false
annotations:
openbis_type: OBJECT (PARENT)
openbis_label: Sample
82 changes: 82 additions & 0 deletions Notebooks/Metadata_Schemas_LinkML/singleObject.yaml
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id: https://w3id.org/linkml/examples/materialsML
name: materialsML
prefixes:
linkml: https://w3id.org/linkml/
schema: http://schema.org/
emmo: https://w3id.org/emmo#
emmo_da: http://emmo.info/domain-atomistic#
emmo_nano: http://emmo.info/emmo/nanoind#
emmo_chameo: https://w3id.org/emmo-chameo/chameo#
emmo_electrochemistry: https://w3id.org/emmo/domain/electrochemistry#
fairmat_sts: https://fairmat-nfdi.github.io/nexus_definitions/classes/contributed_definitions/NXsts.html#
ncit: http://purl.obolibrary.org/obo/ncit.owl#
occo: http://purl.obolibrary.org/obo/occo.owl#
chmo: http://purl.obolibrary.org/obo/chmo.owl#
chebi: http://purl.obolibrary.org/obo/chebi.owl#
obi: http://purl.obolibrary.org/obo/obi.owl#
opmi: http://purl.obolibrary.org/obo/opmi.owl#
iao: http://purl.obolibrary.org/obo/iao.owl#
sio: http://semanticscience.org/ontology/sio.owl#
ome_onto: http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#
apollo: http://purl.obolibrary.org/obo/apollo_sv.owl#
afe: http://purl.allotrope.org/ontologies/equipment#
materialsML: https://w3id.org/linkml/examples/materialsML/
xsd: http://www.w3.org/2001/XMLSchema#
foaf: http://xmlns.com/foaf/0.1/
qudt: http://qudt.org/schema/qudt/
unit: http://qudt.org/vocab/unit/
dcat: http://www.w3.org/ns/dcat#
# default_curi_maps:
# - semweb_context
imports:
- linkml:types
default_prefix: materialsML

classes:
Person:
title: Person
class_uri: schema:Person
description: Person
annotations:
openbis_object: true
openbis_code: PERS
openbis_label: Person
slots:
- short_name
- work_status
- work_phone
- mobile_phone

slots:
short_name:
description: username
range: string
slot_uri: foaf:accountName
multivalued: false
annotations:
openbis_type: VARCHAR
openbis_label: Username
work_status:
description: work status
range: boolean
slot_uri: opmi:OPMI_0000122
multivalued: false
annotations:
openbis_type: BOOLEAN
openbis_label: Work status
mobile_phone:
description: mobile phone
range: string
slot_uri: ncit:NCIT_C98193
multivalued: false
annotations:
openbis_type: VARCHAR
openbis_label: Mobile phone
work_phone:
description: work phone
range: string
slot_uri: schema:telephone
multivalued: false
annotations:
openbis_type: VARCHAR
openbis_label: Work phone
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