DIFFTEM - DIFFERENTIABLE ELECTRON MICROSCOPY SIMULATION: METHODS AND APPLICATIONS

This repository contains code for simulation and running experiments presented in DiffTEM paper.

You have to install all packages in below to run the code.

Dependencies

• PyTorch
• Taichi
• PyTest
• Numpy
• mrcfile
• stannum
• focal_frequency_loss
• tensorboard
• wandb
• jupyter notebook

To estimate the modulation transfer function (MTF) parameters of the detector, please check the jupyter notebook:

learn_detector_parameters.ipynb

To run denoising experiments, please check the python file:

run_denoising_experiments.py

If you meet any issues or have any concerns about this repository, please feel free to contact the corresponding author via email: [email protected]