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actions-user committed Sep 28, 2024
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4 changes: 2 additions & 2 deletions data/cleaned_napari_plugins.csv
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2 changes: 1 addition & 1 deletion data/final_plugins.csv
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","['Development Status :: 2 - Pre-Alpha', 'Intended Audience :: Developers', 'Framework :: napari', 'Topic :: Software Development :: Testing', 'Programming Language :: Python', 'Programming Language :: Python :: 3', 'Programming Language :: Python :: 3.7', 'Programming Language :: Python :: 3.8', 'Programming Language :: Python :: 3.9', 'Operating System :: OS Independent', 'License :: OSI Approved :: BSD License']","['Bug Tracker, https://github.com/sebgoti/napari-spatial-omics/issues', 'Documentation, https://github.com/sebgoti/napari-spatial-omics#README.md', 'Source Code, https://github.com/sebgoti/napari-spatial-omics', 'User Support, https://github.com/sebgoti/napari-spatial-omics/issues']",napari-spatial-omics.napari_get_reader,,napari-spatial-omics.example_magic_widget,,['*'],,,https://pypi.org/project/napari-spatial-omics,https://github.com/sebgoti/napari-spatial-omics,
337,napari spatialdata,0.5.3,2022-08-18,2024-08-19,napari-spatialdata,giovanni palla,[email protected],BSD-3-Clause,https://github.com/scverse/napari-spatialdata.git,Interactive visualization of spatial omics data with napari,>=3.9.2,"['anndata', 'click', 'cycler', 'dask>=2024.4.1', 'geopandas', 'loguru', 'matplotlib', 'napari>=0.4.19.post1', 'napari-matplotlib', 'numba', 'numpy', 'packaging', 'pandas', 'pillow', 'qtpy', 'scanpy', 'scipy', 'shapely', 'scikit-learn', 'spatialdata>=0.2.1', 'superqt', 'typing-extensions>=4.8.0', 'vispy', 'xarray', 'xarray-datatree', 'napari[pyqt5]; extra == ""all""', 'sphinx>=4.5; extra == ""doc""', 'sphinx-book-theme>=1.0.0; extra == ""doc""', 'myst-parser; extra == ""doc""', 'sphinxcontrib-bibtex>=1.0.0; extra == ""doc""', 'sphinx-autodoc-typehints>=1.11.0; extra == ""doc""', 'sphinx-autobuild; extra == ""doc""', 'scanpydoc; extra == ""doc""', 'ipykernel; extra == ""doc""', 'ipython; extra == ""doc""', 'sphinx-copybutton; extra == ""doc""', 'sphinx-qt-documentation; extra == ""doc""', 'myst-nb; extra == ""doc""', 'squidpy; extra == ""doc""', 'spatialdata>=0.1.0-pre0; extra == ""pre""', 'pydantic<2; extra == ""readthedocs""', 'loguru; extra == ""test""', 'pytest; extra == ""test""', 'pytest-cov; extra == ""test""', 'pytest-qt; extra == ""test""', 'pre-commit>=2.9.0; extra == ""test""']","![SpatialData banner](https://github.com/scverse/spatialdata/blob/main/docs/_static/img/spatialdata_horizontal.png?raw=true)
337,napari spatialdata,0.5.3,2022-08-18,2024-09-27,napari-spatialdata,giovanni palla,[email protected],BSD-3-Clause,https://github.com/scverse/napari-spatialdata.git,Interactive visualization of spatial omics data with napari,>=3.9.2,"['anndata', 'click', 'cycler', 'dask>=2024.4.1', 'geopandas', 'loguru', 'matplotlib', 'napari>=0.4.19.post1', 'napari-matplotlib', 'numba', 'numpy', 'packaging', 'pandas', 'pillow', 'qtpy', 'scanpy', 'scipy', 'shapely', 'scikit-learn', 'spatialdata>=0.2.1', 'superqt', 'typing-extensions>=4.8.0', 'vispy', 'xarray', 'xarray-datatree', 'napari[pyqt5]; extra == ""all""', 'sphinx>=4.5; extra == ""doc""', 'sphinx-book-theme>=1.0.0; extra == ""doc""', 'myst-parser; extra == ""doc""', 'sphinxcontrib-bibtex>=1.0.0; extra == ""doc""', 'sphinx-autodoc-typehints>=1.11.0; extra == ""doc""', 'sphinx-autobuild; extra == ""doc""', 'scanpydoc; extra == ""doc""', 'ipykernel; extra == ""doc""', 'ipython; extra == ""doc""', 'sphinx-copybutton; extra == ""doc""', 'sphinx-qt-documentation; extra == ""doc""', 'myst-nb; extra == ""doc""', 'squidpy; extra == ""doc""', 'spatialdata>=0.1.0-pre0; extra == ""pre""', 'pydantic<2; extra == ""readthedocs""', 'loguru; extra == ""test""', 'pytest; extra == ""test""', 'pytest-cov; extra == ""test""', 'pytest-qt; extra == ""test""', 'pre-commit>=2.9.0; extra == ""test""']","![SpatialData banner](https://github.com/scverse/spatialdata/blob/main/docs/_static/img/spatialdata_horizontal.png?raw=true)

# napari-spatialdata: interactive exploration and annotation of spatial omics data

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4 changes: 2 additions & 2 deletions plugins/napari-spatialdata.html
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<div class="">
<p class="font-bold whitespace-nowrap">Last updated<!-- -->:</p>
<ul class="MetadataList_list__3DlqI list-none text-sm leading-normal">
<li class="MetadataList_textItem__KKmMN">2024-08-19</li>
<li class="MetadataList_textItem__KKmMN">2024-09-27</li>
</ul>
</div>
</div>
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updated<!-- -->:</p>
<ul
class="MetadataList_list__3DlqI list-none text-sm leading-normal inline space-y-sds-s MetadataList_inline__jHQLo">
<li class="MetadataList_textItem__KKmMN">2024-08-19</li>
<li class="MetadataList_textItem__KKmMN">2024-09-27</li>
</ul>
</div>
</div>
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76 changes: 38 additions & 38 deletions plugins_list.html
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@@ -1,6 +1,35 @@
<html>
<body>
<a class="col-span-2 screen-1425:col-span-3 searchResult py-sds-xl border-black border-t-2 last:border-b-2 hover:bg-hub-gray-100" data-testid="pluginSearchResult" href="./plugins/napari-convpaint.html" data-plugin-id="0">
<a class="col-span-2 screen-1425:col-span-3 searchResult py-sds-xl border-black border-t-2 last:border-b-2 hover:bg-hub-gray-100" data-testid="pluginSearchResult" href="./plugins/napari-spatialdata.html" data-plugin-id="0">
<article class="grid gap-x-sds-xl screen-495:gap-x-12 screen-600:grid-cols-2 screen-1425:grid-cols-napari-3" data-testid="searchResult">
<div class="col-span-2 screen-495:col-span-1 screen-1425:col-span-2 flex flex-col justify-between">
<div>
<h3 class="font-bold text-lg" data-testid="searchResultDisplayName">napari spatialdata</h3>
<span class="mt-sds-m screen-495:mt-3 text-[0.6875rem]" data-testid="searchResultName">napari-spatialdata</span>
<p class="mt-3" data-testid="searchResultSummary">Interactive visualization of spatial omics data with napari</p>
</div>
<ul class="mt-3 text-xs">
<li class="my-sds-s font-bold PluginSearchResult_linkItem__Vvs7H" data-testid="searchResultAuthor">giovanni palla</li>
</ul>
</div>
<ul class="mt-sds-l screen-600:m-0 space-y-1 text-sm col-span-2 screen-495:col-span-1">
<li class="grid grid-cols-[auto,1fr]" data-label="First released" data-testid="searchResultMetadata" data-value="2022-08-18">
<h4 class="inline whitespace-nowrap">First released<!-- -->: </h4>
<span class="ml-sds-xxs font-bold">2022-08-18</span>
</li>
<li class="grid grid-cols-[auto,1fr]" data-label="Last updated" data-testid="searchResultMetadata" data-value="2024-09-27">
<h4 class="inline whitespace-nowrap">Last updated<!-- -->: </h4>
<span class="ml-sds-xxs font-bold">2024-09-27</span>
</li>
<li class="grid grid-cols-[auto,1fr]" data-label="Plugin type" data-testid="searchResultMetadata" data-value="reader, widget">
<h4 class="inline whitespace-nowrap">Plugin type<!-- -->: </h4><span class="ml-sds-xxs font-bold">reader, widget</span>
</li>
</ul>
<div class="mt-sds-xl text-xs flex flex-col gap-sds-s col-span-2 screen-1425:col-span-3">
</div>
</article>
</a>
<a class="col-span-2 screen-1425:col-span-3 searchResult py-sds-xl border-black border-t-2 last:border-b-2 hover:bg-hub-gray-100" data-testid="pluginSearchResult" href="./plugins/napari-convpaint.html" data-plugin-id="1">
<article class="grid gap-x-sds-xl screen-495:gap-x-12 screen-600:grid-cols-2 screen-1425:grid-cols-napari-3" data-testid="searchResult">
<div class="col-span-2 screen-495:col-span-1 screen-1425:col-span-2 flex flex-col justify-between">
<div>
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</div>
</article>
</a>
<a class="col-span-2 screen-1425:col-span-3 searchResult py-sds-xl border-black border-t-2 last:border-b-2 hover:bg-hub-gray-100" data-testid="pluginSearchResult" href="./plugins/napari-threedee.html" data-plugin-id="1">
<a class="col-span-2 screen-1425:col-span-3 searchResult py-sds-xl border-black border-t-2 last:border-b-2 hover:bg-hub-gray-100" data-testid="pluginSearchResult" href="./plugins/napari-threedee.html" data-plugin-id="2">
<article class="grid gap-x-sds-xl screen-495:gap-x-12 screen-600:grid-cols-2 screen-1425:grid-cols-napari-3" data-testid="searchResult">
<div class="col-span-2 screen-495:col-span-1 screen-1425:col-span-2 flex flex-col justify-between">
<div>
Expand Down Expand Up @@ -58,7 +87,7 @@ <h4 class="inline whitespace-nowrap">Plugin type<!-- -->: </h4><span class="ml-s
</div>
</article>
</a>
<a class="col-span-2 screen-1425:col-span-3 searchResult py-sds-xl border-black border-t-2 last:border-b-2 hover:bg-hub-gray-100" data-testid="pluginSearchResult" href="./plugins/napari-skimage.html" data-plugin-id="2">
<a class="col-span-2 screen-1425:col-span-3 searchResult py-sds-xl border-black border-t-2 last:border-b-2 hover:bg-hub-gray-100" data-testid="pluginSearchResult" href="./plugins/napari-skimage.html" data-plugin-id="3">
<article class="grid gap-x-sds-xl screen-495:gap-x-12 screen-600:grid-cols-2 screen-1425:grid-cols-napari-3" data-testid="searchResult">
<div class="col-span-2 screen-495:col-span-1 screen-1425:col-span-2 flex flex-col justify-between">
<div>
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</div>
</article>
</a>
<a class="col-span-2 screen-1425:col-span-3 searchResult py-sds-xl border-black border-t-2 last:border-b-2 hover:bg-hub-gray-100" data-testid="pluginSearchResult" href="./plugins/napari-feature-classifier.html" data-plugin-id="3">
<a class="col-span-2 screen-1425:col-span-3 searchResult py-sds-xl border-black border-t-2 last:border-b-2 hover:bg-hub-gray-100" data-testid="pluginSearchResult" href="./plugins/napari-feature-classifier.html" data-plugin-id="4">
<article class="grid gap-x-sds-xl screen-495:gap-x-12 screen-600:grid-cols-2 screen-1425:grid-cols-napari-3" data-testid="searchResult">
<div class="col-span-2 screen-495:col-span-1 screen-1425:col-span-2 flex flex-col justify-between">
<div>
Expand Down Expand Up @@ -116,7 +145,7 @@ <h4 class="inline whitespace-nowrap">Plugin type<!-- -->: </h4><span class="ml-s
</div>
</article>
</a>
<a class="col-span-2 screen-1425:col-span-3 searchResult py-sds-xl border-black border-t-2 last:border-b-2 hover:bg-hub-gray-100" data-testid="pluginSearchResult" href="./plugins/brainglobe-segmentation.html" data-plugin-id="4">
<a class="col-span-2 screen-1425:col-span-3 searchResult py-sds-xl border-black border-t-2 last:border-b-2 hover:bg-hub-gray-100" data-testid="pluginSearchResult" href="./plugins/brainglobe-segmentation.html" data-plugin-id="5">
<article class="grid gap-x-sds-xl screen-495:gap-x-12 screen-600:grid-cols-2 screen-1425:grid-cols-napari-3" data-testid="searchResult">
<div class="col-span-2 screen-495:col-span-1 screen-1425:col-span-2 flex flex-col justify-between">
<div>
Expand Down Expand Up @@ -145,7 +174,7 @@ <h4 class="inline whitespace-nowrap">Plugin type<!-- -->: </h4><span class="ml-s
</div>
</article>
</a>
<a class="col-span-2 screen-1425:col-span-3 searchResult py-sds-xl border-black border-t-2 last:border-b-2 hover:bg-hub-gray-100" data-testid="pluginSearchResult" href="./plugins/cellpose-napari.html" data-plugin-id="5">
<a class="col-span-2 screen-1425:col-span-3 searchResult py-sds-xl border-black border-t-2 last:border-b-2 hover:bg-hub-gray-100" data-testid="pluginSearchResult" href="./plugins/cellpose-napari.html" data-plugin-id="6">
<article class="grid gap-x-sds-xl screen-495:gap-x-12 screen-600:grid-cols-2 screen-1425:grid-cols-napari-3" data-testid="searchResult">
<div class="col-span-2 screen-495:col-span-1 screen-1425:col-span-2 flex flex-col justify-between">
<div>
Expand Down Expand Up @@ -174,7 +203,7 @@ <h4 class="inline whitespace-nowrap">Plugin type<!-- -->: </h4><span class="ml-s
</div>
</article>
</a>
<a class="col-span-2 screen-1425:col-span-3 searchResult py-sds-xl border-black border-t-2 last:border-b-2 hover:bg-hub-gray-100" data-testid="pluginSearchResult" href="./plugins/napari-3d-counter.html" data-plugin-id="6">
<a class="col-span-2 screen-1425:col-span-3 searchResult py-sds-xl border-black border-t-2 last:border-b-2 hover:bg-hub-gray-100" data-testid="pluginSearchResult" href="./plugins/napari-3d-counter.html" data-plugin-id="7">
<article class="grid gap-x-sds-xl screen-495:gap-x-12 screen-600:grid-cols-2 screen-1425:grid-cols-napari-3" data-testid="searchResult">
<div class="col-span-2 screen-495:col-span-1 screen-1425:col-span-2 flex flex-col justify-between">
<div>
Expand Down Expand Up @@ -203,7 +232,7 @@ <h4 class="inline whitespace-nowrap">Plugin type<!-- -->: </h4><span class="ml-s
</div>
</article>
</a>
<a class="col-span-2 screen-1425:col-span-3 searchResult py-sds-xl border-black border-t-2 last:border-b-2 hover:bg-hub-gray-100" data-testid="pluginSearchResult" href="./plugins/stardist-napari.html" data-plugin-id="7">
<a class="col-span-2 screen-1425:col-span-3 searchResult py-sds-xl border-black border-t-2 last:border-b-2 hover:bg-hub-gray-100" data-testid="pluginSearchResult" href="./plugins/stardist-napari.html" data-plugin-id="8">
<article class="grid gap-x-sds-xl screen-495:gap-x-12 screen-600:grid-cols-2 screen-1425:grid-cols-napari-3" data-testid="searchResult">
<div class="col-span-2 screen-495:col-span-1 screen-1425:col-span-2 flex flex-col justify-between">
<div>
Expand Down Expand Up @@ -232,7 +261,7 @@ <h4 class="inline whitespace-nowrap">Plugin type<!-- -->: </h4><span class="ml-s
</div>
</article>
</a>
<a class="col-span-2 screen-1425:col-span-3 searchResult py-sds-xl border-black border-t-2 last:border-b-2 hover:bg-hub-gray-100" data-testid="pluginSearchResult" href="./plugins/pycudadecon.html" data-plugin-id="8">
<a class="col-span-2 screen-1425:col-span-3 searchResult py-sds-xl border-black border-t-2 last:border-b-2 hover:bg-hub-gray-100" data-testid="pluginSearchResult" href="./plugins/pycudadecon.html" data-plugin-id="9">
<article class="grid gap-x-sds-xl screen-495:gap-x-12 screen-600:grid-cols-2 screen-1425:grid-cols-napari-3" data-testid="searchResult">
<div class="col-span-2 screen-495:col-span-1 screen-1425:col-span-2 flex flex-col justify-between">
<div>
Expand Down Expand Up @@ -261,35 +290,6 @@ <h4 class="inline whitespace-nowrap">Plugin type<!-- -->: </h4><span class="ml-s
</div>
</article>
</a>
<a class="col-span-2 screen-1425:col-span-3 searchResult py-sds-xl border-black border-t-2 last:border-b-2 hover:bg-hub-gray-100" data-testid="pluginSearchResult" href="./plugins/napari-spatialdata.html" data-plugin-id="9">
<article class="grid gap-x-sds-xl screen-495:gap-x-12 screen-600:grid-cols-2 screen-1425:grid-cols-napari-3" data-testid="searchResult">
<div class="col-span-2 screen-495:col-span-1 screen-1425:col-span-2 flex flex-col justify-between">
<div>
<h3 class="font-bold text-lg" data-testid="searchResultDisplayName">napari spatialdata</h3>
<span class="mt-sds-m screen-495:mt-3 text-[0.6875rem]" data-testid="searchResultName">napari-spatialdata</span>
<p class="mt-3" data-testid="searchResultSummary">Interactive visualization of spatial omics data with napari</p>
</div>
<ul class="mt-3 text-xs">
<li class="my-sds-s font-bold PluginSearchResult_linkItem__Vvs7H" data-testid="searchResultAuthor">giovanni palla</li>
</ul>
</div>
<ul class="mt-sds-l screen-600:m-0 space-y-1 text-sm col-span-2 screen-495:col-span-1">
<li class="grid grid-cols-[auto,1fr]" data-label="First released" data-testid="searchResultMetadata" data-value="2022-08-18">
<h4 class="inline whitespace-nowrap">First released<!-- -->: </h4>
<span class="ml-sds-xxs font-bold">2022-08-18</span>
</li>
<li class="grid grid-cols-[auto,1fr]" data-label="Last updated" data-testid="searchResultMetadata" data-value="2024-08-19">
<h4 class="inline whitespace-nowrap">Last updated<!-- -->: </h4>
<span class="ml-sds-xxs font-bold">2024-08-19</span>
</li>
<li class="grid grid-cols-[auto,1fr]" data-label="Plugin type" data-testid="searchResultMetadata" data-value="reader, widget">
<h4 class="inline whitespace-nowrap">Plugin type<!-- -->: </h4><span class="ml-sds-xxs font-bold">reader, widget</span>
</li>
</ul>
<div class="mt-sds-xl text-xs flex flex-col gap-sds-s col-span-2 screen-1425:col-span-3">
</div>
</article>
</a>
<a class="col-span-2 screen-1425:col-span-3 searchResult py-sds-xl border-black border-t-2 last:border-b-2 hover:bg-hub-gray-100" data-testid="pluginSearchResult" href="./plugins/brainglobe-utils.html" data-plugin-id="10">
<article class="grid gap-x-sds-xl screen-495:gap-x-12 screen-600:grid-cols-2 screen-1425:grid-cols-napari-3" data-testid="searchResult">
<div class="col-span-2 screen-495:col-span-1 screen-1425:col-span-2 flex flex-col justify-between">
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20 changes: 10 additions & 10 deletions plugins_manifest.json
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@@ -1,43 +1,43 @@
[
{
"plugin_id": 0,
"html_filename": "napari-convpaint.html"
"html_filename": "napari-spatialdata.html"
},
{
"plugin_id": 1,
"html_filename": "napari-threedee.html"
"html_filename": "napari-convpaint.html"
},
{
"plugin_id": 2,
"html_filename": "napari-skimage.html"
"html_filename": "napari-threedee.html"
},
{
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"html_filename": "napari-feature-classifier.html"
"html_filename": "napari-skimage.html"
},
{
"plugin_id": 4,
"html_filename": "brainglobe-segmentation.html"
"html_filename": "napari-feature-classifier.html"
},
{
"plugin_id": 5,
"html_filename": "cellpose-napari.html"
"html_filename": "brainglobe-segmentation.html"
},
{
"plugin_id": 6,
"html_filename": "napari-3d-counter.html"
"html_filename": "cellpose-napari.html"
},
{
"plugin_id": 7,
"html_filename": "stardist-napari.html"
"html_filename": "napari-3d-counter.html"
},
{
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"html_filename": "pycudadecon.html"
"html_filename": "stardist-napari.html"
},
{
"plugin_id": 9,
"html_filename": "napari-spatialdata.html"
"html_filename": "pycudadecon.html"
},
{
"plugin_id": 10,
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