Version 0.3 Arcanine

Cargo.toml

@@ -1,6 +1,6 @@
 [package]
 name = "rustyread"
-version = "0.2.0"
+version = "0.3.0"
 authors = ["Pierre Marijon <[email protected]>"]
 edition = "2018"
 description = "A long read generator based on badread method"
@@ -24,7 +24,6 @@ uuid           = { version = "0.8", features = ["v3"] }
 rayon          = "1"
 
 # input output management
-term_size      = "0.3"
 niffler	       = { version = "2", features = ["bz2", "lzma", "gz"] }
 
 # CLI management

Readme.md

@@ -50,9 +50,9 @@ Rustyread memory usage could be estimated with formula: `2 * reference base + 2
 ### Full usage
 
 ```
-rustyread 0.2 Electabuzz
+rustyread 0.3 Arcanine
 Pierre Marijon <[email protected]>
-A long read simulator based on badread idea
+A long read simulator based on badread idea and model
 
 USAGE:
     rustyread [FLAGS] [OPTIONS] <SUBCOMMAND>
@@ -111,6 +111,10 @@ OPTIONS:
         --length <length>
             Fragment length distribution (mean and stdev) [default: 15000,13000]
 
+        --number_base_store <nb-base-store>
+            Number of base, rustyread can store in ram before write in output in absolute value
+            (e.g. 250M) or a relative depth (e.g. 25x)
+
         --output <output-path>                     Where read is write
         --qscore_model <qscore-model>
             Path to an quality score model file [default: nanopore2020]
@@ -158,7 +162,7 @@ cargo install --git https://github.com/natir/rustyread.git
 ```
 git clone https://github.com/natir/rustyread.git
 cd rustyread
-git checkout 0.2
+git checkout 0.3
 cargo install --path .
 ```
 

src/cli/mod.rs

@@ -9,9 +9,9 @@ pub mod simulate;
 #[derive(clap::Clap, Debug)]
 #[clap(
     name = "rustyread",
-    version = "0.2 Electabuzz",
+    version = "0.3 Arcanine",
     author = "Pierre Marijon <[email protected]>",
-    about = "A long read simulator based on badread idea"
+    about = "A long read simulator based on badread idea and model"
 )]
 pub struct Command {
     /// Subcommand call