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@neufeld

Dr. Josh Neufeld's Lab

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  1. pandaseq pandaseq Public

    PAired-eND Assembler for DNA sequences

    C 129 24

  2. AXIOME AXIOME Public

    AXIOME - Automation, Extension, and Integration Of Microbial Ecology: Helper tools to make managing numerical ecology pipelines easier

    Vala 13 3

  3. AXIOME3 AXIOME3 Public

    Automated QIIME 2 Workflow wrapped in Luigi Framework currently in early development

    Python 8 2

  4. SSUnique SSUnique Public

    SSUnique is a software tool designed to process unclassified and/ or rare fractions of SSU rRNA gene sequence libraries. Specifically, SSUnique generates a network- based visualization of taxonomic…

    R 6 1

  5. axiometic axiometic Public

    A GUI companion for AXIOME

    Python 3

  6. AXIOME3-GUI AXIOME3-GUI Public

    AXIOME3 Full Stack Project

    Python 3 1

Repositories

Showing 10 of 12 repositories
  • AOA-genomics Public

    Calvin Cornell scripts for assessing genome-encoded metabolic potential of ammonia-oxidizing archaea

    neufeld/AOA-genomics’s past year of commit activity
    Python 0 BSD-3-Clause 0 0 0 Updated Jul 15, 2024
  • AXIOME2 Public

    Automation, eXtension, and Integration of Microbial Ecology

    neufeld/AXIOME2’s past year of commit activity
    Python 0 4 4 1 Updated Feb 22, 2024
  • AXIOME3-GUI Public

    AXIOME3 Full Stack Project

    neufeld/AXIOME3-GUI’s past year of commit activity
    Python 3 BSD-3-Clause 1 7 13 Updated Aug 22, 2023
  • AXIOME3 Public

    Automated QIIME 2 Workflow wrapped in Luigi Framework currently in early development

    neufeld/AXIOME3’s past year of commit activity
    Python 8 BSD-3-Clause 2 1 0 Updated Apr 17, 2022
  • pandaseq Public

    PAired-eND Assembler for DNA sequences

    neufeld/pandaseq’s past year of commit activity
    C 129 GPL-3.0 24 4 0 Updated Dec 21, 2020
  • lab-server-training Public

    Server training for the Neufeld lab

    neufeld/lab-server-training’s past year of commit activity
    0 BSD-3-Clause 0 0 0 Updated Sep 22, 2020
  • SSUnique Public

    SSUnique is a software tool designed to process unclassified and/ or rare fractions of SSU rRNA gene sequence libraries. Specifically, SSUnique generates a network- based visualization of taxonomic assignments then extracts unclassified and/or rare sequence groups, filtering these groups for phylogenetic novelty.

    neufeld/SSUnique’s past year of commit activity
    R 6 1 0 0 Updated Nov 19, 2016
  • pandaseq-sam Public

    PAired-eND Assembler for DNA sequences – SAM/BAM format support

    neufeld/pandaseq-sam’s past year of commit activity
    C 2 GPL-3.0 1 0 0 Updated Jul 25, 2016
  • MESaS Public

    Microbial Ecology Scripts and Stuff

    neufeld/MESaS’s past year of commit activity
    R 1 MIT 1 0 0 Updated May 22, 2015
  • AXIOME Public

    AXIOME - Automation, Extension, and Integration Of Microbial Ecology: Helper tools to make managing numerical ecology pipelines easier

    neufeld/AXIOME’s past year of commit activity
    Vala 13 GPL-3.0 3 4 0 Updated Jun 20, 2014
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