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fiorini9 authored Sep 13, 2023
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Expand Up @@ -5,10 +5,6 @@ The `scrnabox.slurm` is a single-cell RNA sequencing (scRNAseq) pipeline specifi

The Standard Analysis Track is designed for experiments where each sample is captured and sequenced separately, while the Cell Hashtag Analysis Track is designed for multiplexed experiments, whereby samples are tagged with sample-specific barcodes, pooled, and sequenced together. The Cell Hashtag Analysis Track is distinguished by an additional sample demultiplexing Step that assigns cells to their sample-of-origin via the sample-specific barcodes. Please refer to the [documentation](https://neurobioinfo.github.io/scrnabox/site/) for comprehensive instructions regarding the application of each Analysis Track.

you can find comprehensive instructions on how to utilize the pipeline for [Cell Hashtags]() and [Standard scRNA-seq](), the pipeline provides detailed guidance on processing and analyzing these specific types of single-cell RNA sequencing (scRNA-seq) data.

Please refer to the [documentation](https://neurobioinfo.github.io/scrnabox/site/) for an explanation and of how and why to use scrnabox's pipeline.

## Contents
- [Workflow analysis](#workflow-analysis)
- [Standard scRNA-seq](#standard-scRNA-seq)
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