Update step4_par.txt

scrnabox.slurm/hto/pars/step4_par.txt

@@ -20,12 +20,6 @@ par_selection.method="vst"
 ## Number of features to select as top variable features
 par_nfeatures= 2500
 
-##  Which dimensions to use as input features for RunUMAP
-par_dims_umap=3
-
-## This determines the number of neighbouring points used in local approximations of manifold structure.
-par_n.neighbors=65
-
 
 ############################################################################
 # Parameters for linear dimensional reduction
@@ -36,6 +30,12 @@ par_dimensionality_reduction="yes"
 ## Total Number of PCs to compute and store for RunPCA
 par_npcs_pca = 30
 
+##  Which dimensions to use as input features for RunUMAP
+par_dims_umap=3
+
+## This determines the number of neighbouring points used in local approximations of manifold structure.
+par_n.neighbors=65
+
 
 ############################################################################
 # Doublet detection and demultiplexing with MULTIseqDemux
@@ -62,4 +62,4 @@ par_RidgePlot_ncol=3
 
 par_old_antibody_label=c("A-TotalSeqA", "B-TotalSeqA", "C-TotalSeqA", "D-TotalSeqA", "E-TotalSeqA", "F-TotalSeqA", "G-TotalSeqA", "H-TotalSeqA", "Doublet")
 
-par_new_antibody_label=c("sample-A","sample-B","sample-C","sample-D","sample-E","sample-F","sample-G","sample-H","Doublet")
+par_new_antibody_label=c("sample-A","sample-B","sample-C","sample-D","sample-E","sample-F","sample-G","sample-H","Doublet")