Update scrna_step3.R

neurobioinfo · Sep 17, 2023 · ee4e88a · ee4e88a
1 parent 54f4d9f
commit ee4e88a
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/scrnabox.slurm/scrna/scripts/step3/scrna_step3.R b/scrnabox.slurm/scrna/scripts/step3/scrna_step3.R
@@ -19,7 +19,7 @@ GENEUMIU=as.numeric(args[10])
 #PRIBOL=as.numeric(args[11]) ######## NEEDS SAEIDS ATTENTION: Saeid, can you please modify the underlying code to make the two commented lines possible? This is to set the thresholds for percent ribosomal genes (it is the same aa mitochondria but for ribosome). For now I am setting them manually to NA
 #PRIBOU=as.numeric(args[12])
 PRIBOL <- 0
-PRIBOU<- 10
+PRIBOU<- 100
 
 ## load library
 .libPaths(r_lib_path)
@@ -383,4 +383,4 @@ foreach (i=1:length(sample_name)) %do% {
 writeLines(capture.output(sessionInfo()), paste(output_dir,'/step3/info3/sessionInfo.txt', sep=""))
 if(file.exists("Rplots.pdf")){
     file.remove("Rplots.pdf")
-}
+}