Fix typo #84
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| name: Build NEURON Python wheels | ||
| on: | ||
| push: | ||
| branches: | ||
| - master | ||
| pull_request: | ||
| branches: | ||
| - master | ||
| schedule: | ||
| - cron: "0 0 * * *" | ||
| branches: | ||
| - master | ||
| workflow_dispatch: | ||
| inputs: | ||
| rel_release: | ||
| description: Release branch/commit | ||
| default: 'release/x.y' | ||
| required: true | ||
| rel_version: | ||
| description: Release version (tag name), in format major.minor.patch | ||
| default: '' | ||
| required: false | ||
| upload: | ||
| description: Whether to upload to PyPI or not | ||
| default: false | ||
| required: true | ||
| type: boolean | ||
| type: | ||
| description: The type of build (release or nightly) | ||
| default: 'nightly' | ||
| options: | ||
| - 'nightly' | ||
| - 'release' | ||
| jobs: | ||
| build-test: | ||
| name: Build and test Python ${{ matrix.python-version }} wheel on ${{ matrix.os }} | ||
| runs-on: ${{ matrix.os }} | ||
| timeout-minutes: 60 | ||
| strategy: | ||
| matrix: | ||
| os: ['macos-13', 'macos-14', 'ubuntu-22.04', 'ubuntu-22.04-arm'] | ||
| python-version: ['3.9', '3.13'] | ||
| include: | ||
| - python-version: '3.9' | ||
| python-org-version: '3.9.13' | ||
| python-installer-name: 'macos11.pkg' | ||
| - python-version: '3.13' | ||
| python-org-version: '3.13.0' | ||
| python-installer-name: 'macos11.pkg' | ||
| - os: 'ubuntu-22.04' | ||
| base_image: 'docker.io/neuronsimulator/neuron_wheel:manylinux_2_28_x86_64' | ||
| - os: 'ubuntu-22.04-arm' | ||
| base_image: 'docker.io/neuronsimulator/neuron_wheel:manylinux_2_28_aarch64' | ||
| steps: | ||
| - name: Check out code | ||
| if: github.event_name != 'workflow_dispatch' | ||
| uses: actions/checkout@v4 | ||
| with: | ||
| submodules: recursive | ||
| - name: Check out code for specific release | ||
| if: github.event_name == 'workflow_dispatch' | ||
| uses: actions/checkout@v4 | ||
| with: | ||
| ref: ${{ github.inputs.rel_release }} | ||
| submodules: recursive | ||
| - name: Install Python from python.org | ||
| if: runner.os == 'macOS' | ||
| run: | | ||
| installer="python-${{ matrix.python-org-version }}-${{ matrix.python-installer-name }}" | ||
| url="https://www.python.org/ftp/python/${{ matrix.python-org-version }}/${installer}" | ||
| curl $url -o $installer | ||
| sudo installer -pkg $installer -target / | ||
| - name: Install System Dependencies | ||
| if: runner.os == 'macOS' | ||
| run: | | ||
| brew install --cask xquartz | ||
| brew install flex bison cmake mpich | ||
| brew unlink mpich && brew install openmpi | ||
| cmake --version | ||
| # Uninstall libomp for compatibility with issue #817 | ||
| brew uninstall --ignore-dependencies libomp || echo "libomp doesn't exist" | ||
| echo "$(brew --prefix)/opt/cmake/bin:$(brew --prefix)/opt/flex/bin:$(brew --prefix)/opt/bison/bin" >> $GITHUB_PATH | ||
| - name: Install readline | ||
| if: runner.os == 'macOS' | ||
| run: | | ||
| sudo mkdir -p /opt/nrnwheel/$(uname -m) | ||
| sudo bash packaging/python/build_static_readline_osx.bash | ||
| - name: Set env for release | ||
| if: github.event.inputs.type == 'release' | ||
| run: | | ||
| echo "NRN_NIGHTLY_UPLOAD=false" >> $GITHUB_ENV | ||
| echo NRN_RELEASE_UPLOAD=${{ github.event.inputs.upload }} >> $GITHUB_ENV | ||
| echo "NEURON_NIGHTLY_TAG=" >> $GITHUB_ENV | ||
| - name: Set env for nightly | ||
| if: github.event.inputs.type == 'nightly' | ||
| run: | | ||
| echo "NRN_RELEASE_UPLOAD=false" >> $GITHUB_ENV | ||
| echo NRN_NIGHTLY_UPLOAD=${{ github.event.inputs.upload }} >> $GITHUB_ENV | ||
| echo "NEURON_NIGHTLY_TAG=-nightly" >> $GITHUB_ENV | ||
| - name: Override env for scheduled run | ||
| if: github.event.schedule != '' | ||
| run: | | ||
| echo "NRN_RELEASE_UPLOAD=false" >> $GITHUB_ENV | ||
| echo "NRN_NIGHTLY_UPLOAD=true" >> $GITHUB_ENV | ||
| echo "NEURON_NIGHTLY_TAG=-nightly" >> $GITHUB_ENV | ||
| - name: Set version | ||
| run: | | ||
| if [ -n ${{ github.event.inputs.rel_version }} ] | ||
| then | ||
| echo SETUPTOOLS_SCM_PRETEND_VERSION=${{ github.event.inputs.rel_version }} >> $GITHUB_ENV | ||
| fi | ||
| - name: Build wheel | ||
| if: runner.os == 'macOS' | ||
| run: | | ||
| packaging/python/build_wheels.bash osx ${{ matrix.python-version }} coreneuron | ||
| - name: Build Manylinux wheel | ||
| if: runner.os != 'macOS' | ||
| run: | | ||
| docker run --rm \ | ||
| -w /root/nrn \ | ||
| -v $(pwd):/root/nrn \ | ||
| -e NEURON_NIGHTLY_TAG \ | ||
| -e NRN_NIGHTLY_UPLOAD \ | ||
| -e NRN_RELEASE_UPLOAD \ | ||
| -e SETUPTOOLS_SCM_PRETEND_VERSION \ | ||
| -e NRN_BUILD_FOR_UPLOAD=1 \ | ||
| ${{ matrix.base_image }} \ | ||
| packaging/python/build_wheels.bash linux ${{ matrix.python-version }} coreneuron | ||
| - name: Upload wheel files | ||
| uses: actions/upload-artifact@v4 | ||
| with: | ||
| name: wheels-${{ matrix.python-version }}-${{ matrix.os }} | ||
| path: wheelhouse/*.whl | ||
| - name: Setup Python ${{ matrix.python-version }} for testing | ||
| uses: actions/setup-python@v5 | ||
| with: | ||
| python-version: ${{ matrix.python-version }} | ||
| - name: Install test dependencies | ||
| if: runner.os != 'macOS' | ||
| run: | | ||
| sudo apt update | ||
| sudo apt install -y mpich openmpi-bin libopenmpi-dev libmpich-dev | ||
| - name: Test wheel with ${{ matrix.python-version }} | ||
| run: | | ||
| minor_version="$(python${{ matrix.python-version }} -c 'import sys;print(sys.version_info.minor)')" | ||
| packaging/python/test_wheels.sh $(which python${{ matrix.python-version }}) wheelhouse/*cp3${minor_version}*.whl | ||
| merge: | ||
| name: Merge artifacts | ||
| runs-on: ubuntu-latest | ||
| needs: [build-test] | ||
| steps: | ||
| - name: Merge Artifacts | ||
| uses: actions/upload-artifact/merge@v4 | ||
| with: | ||
| delete-merged: true | ||
| name: wheels | ||
| pattern: wheels-* | ||
| upload: | ||
| name: Upload wheels | ||
| runs-on: ubuntu-latest | ||
| needs: merge | ||
| steps: | ||
| - name: Upload wheels | ||
| if: github.event.inputs.upload == true | ||
| run: echo "TODO" | ||
| final: | ||
| name: Final CI | ||
| needs: [merge] | ||
| if: ${{ always() }} | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - name: Check if CI matrix is successful | ||
| if: >- | ||
| ${{ | ||
| contains(needs.*.result, 'failure') | ||
| || contains(needs.*.result, 'cancelled') | ||
| || contains(needs.*.result, 'skipped') | ||
| }} | ||
| run: exit 1 | ||
