-
Notifications
You must be signed in to change notification settings - Fork 122
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
- Loading branch information
Showing
7 changed files
with
233 additions
and
468 deletions.
There are no files selected for viewing
This file was deleted.
Oops, something went wrong.
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,203 @@ | ||
| name: Build NEURON Python wheels | ||
|
|
||
| on: | ||
| push: | ||
| branches: | ||
| - master | ||
| pull_request: | ||
| branches: | ||
| - master | ||
| schedule: | ||
| - cron: "0 0 * * *" | ||
| branches: | ||
| - master | ||
|
|
||
| workflow_dispatch: | ||
| inputs: | ||
| rel_release: | ||
| description: Release branch/commit | ||
| default: 'release/x.y' | ||
| required: true | ||
| rel_version: | ||
| description: Release version (tag name), in format major.minor.patch | ||
| default: '' | ||
| required: false | ||
| upload: | ||
| description: Whether to upload to PyPI or not | ||
| default: false | ||
| required: true | ||
| type: boolean | ||
| type: | ||
| description: The type of build (release or nightly) | ||
| default: 'nightly' | ||
| options: | ||
| - 'nightly' | ||
| - 'release' | ||
|
|
||
| jobs: | ||
| build-test: | ||
| name: Build and test Python ${{ matrix.python-version }} wheel on ${{ matrix.os }} | ||
| runs-on: ${{ matrix.os }} | ||
| timeout-minutes: 60 | ||
| strategy: | ||
| matrix: | ||
| os: ['macos-13', 'macos-14', 'ubuntu-22.04', 'ubuntu-22.04-arm'] | ||
| python-version: ['3.9', '3.13'] | ||
| include: | ||
| - python-version: '3.9' | ||
| python-org-version: '3.9.13' | ||
| python-installer-name: 'macos11.pkg' | ||
|
|
||
| - python-version: '3.13' | ||
| python-org-version: '3.13.0' | ||
| python-installer-name: 'macos11.pkg' | ||
|
|
||
| - os: 'ubuntu-22.04' | ||
| base_image: 'docker.io/neuronsimulator/neuron_wheel:latest-gcc9-x86_64' | ||
|
|
||
| - os: 'ubuntu-22.04-arm' | ||
| base_image: 'docker.io/neuronsimulator/neuron_wheel:latest-gcc9-aarch64' | ||
|
|
||
| steps: | ||
| - name: Check out code | ||
| if: github.event_name != 'workflow_dispatch' | ||
| uses: actions/checkout@v4 | ||
| with: | ||
| submodules: recursive | ||
|
|
||
| - name: Check out code for specific release | ||
| if: github.event_name == 'workflow_dispatch' | ||
| uses: actions/checkout@v4 | ||
| with: | ||
| ref: ${{ github.inputs.rel_release }} | ||
| submodules: recursive | ||
|
|
||
| - name: Install Python from python.org | ||
| if: runner.os == 'macOS' | ||
| run: | | ||
| installer="python-${{ matrix.python-org-version }}-${{ matrix.python-installer-name }}" | ||
| url="https://www.python.org/ftp/python/${{ matrix.python-org-version }}/${installer}" | ||
| curl $url -o $installer | ||
| sudo installer -pkg $installer -target / | ||
| - name: Install System Dependencies | ||
| if: runner.os == 'macOS' | ||
| run: | | ||
| brew install --cask xquartz | ||
| brew install flex bison cmake mpich | ||
| brew unlink mpich && brew install openmpi | ||
| cmake --version | ||
| # Uninstall libomp for compatibility with issue #817 | ||
| brew uninstall --ignore-dependencies libomp || echo "libomp doesn't exist" | ||
| echo "$(brew --prefix)/opt/cmake/bin:$(brew --prefix)/opt/flex/bin:$(brew --prefix)/opt/bison/bin" >> $GITHUB_PATH | ||
| - name: Install readline | ||
| if: runner.os == 'macOS' | ||
| run: | | ||
| sudo mkdir -p /opt/nrnwheel/$(uname -m) | ||
| sudo bash packaging/python/build_static_readline_osx.bash | ||
| - name: Set env for release | ||
| if: github.event.inputs.type == 'release' | ||
| run: | | ||
| echo "NRN_NIGHTLY_UPLOAD=false" >> $GITHUB_ENV | ||
| echo NRN_RELEASE_UPLOAD=${{ github.event.inputs.upload }} >> $GITHUB_ENV | ||
| echo "NEURON_NIGHTLY_TAG=" >> $GITHUB_ENV | ||
| - name: Set env for nightly | ||
| if: github.event.inputs.type == 'nightly' | ||
| run: | | ||
| echo "NRN_RELEASE_UPLOAD=false" >> $GITHUB_ENV | ||
| echo NRN_NIGHTLY_UPLOAD=${{ github.event.inputs.upload }} >> $GITHUB_ENV | ||
| echo "NEURON_NIGHTLY_TAG=-nightly" >> $GITHUB_ENV | ||
| - name: Override env for scheduled run | ||
| if: github.event.schedule != '' | ||
| run: | | ||
| echo "NRN_RELEASE_UPLOAD=false" >> $GITHUB_ENV | ||
| echo "NRN_NIGHTLY_UPLOAD=true" >> $GITHUB_ENV | ||
| echo "NEURON_NIGHTLY_TAG=-nightly" >> $GITHUB_ENV | ||
| - name: Set version | ||
| run: | | ||
| if [ -n ${{ github.event.inputs.rel_version }} ] | ||
| then | ||
| echo SETUPTOOLS_SCM_PRETEND_VERSION=${{ github.event.inputs.rel_version }} >> $GITHUB_ENV | ||
| fi | ||
| - name: Build wheel | ||
| if: runner.os == 'macOS' | ||
| run: | | ||
| packaging/python/build_wheels.bash osx ${{ matrix.python-version }} coreneuron | ||
| - name: Build Manylinux wheel | ||
| if: runner.os != 'macOS' | ||
| run: | | ||
| docker run --rm \ | ||
| -w /root/nrn \ | ||
| -v $(pwd):/root/nrn \ | ||
| -e NEURON_NIGHTLY_TAG \ | ||
| -e NRN_NIGHTLY_UPLOAD \ | ||
| -e NRN_RELEASE_UPLOAD \ | ||
| -e SETUPTOOLS_SCM_PRETEND_VERSION \ | ||
| -e NRN_BUILD_FOR_UPLOAD=1 \ | ||
| ${{ matrix.base_image }} \ | ||
| packaging/python/build_wheels.bash linux ${{ matrix.python-version }} coreneuron | ||
| - name: Upload wheel files | ||
| uses: actions/upload-artifact@v4 | ||
| with: | ||
| name: wheels-${{ matrix.python-version }}-${{ matrix.os }} | ||
| path: wheelhouse/*.whl | ||
|
|
||
| - name: Setup Python ${{ matrix.python-version }} for testing | ||
| uses: actions/setup-python@v5 | ||
| with: | ||
| python-version: ${{ matrix.python-version }} | ||
|
|
||
| - name: Install test dependencies | ||
| if: runner.os != 'macOS' | ||
| run: | | ||
| sudo apt update | ||
| sudo apt install -y mpich openmpi-bin libopenmpi-dev libmpich-dev | ||
| - name: Test wheel with ${{ matrix.python-version }} | ||
| run: | | ||
| minor_version="$(python${{ matrix.python-version }} -c 'import sys;print(sys.version_info.minor)')" | ||
| packaging/python/test_wheels.sh $(which python${{ matrix.python-version }}) wheelhouse/*cp3${minor_version}*.whl | ||
| merge: | ||
| name: Merge artifacts | ||
| runs-on: ubuntu-latest | ||
| needs: [build-test] | ||
| steps: | ||
| - name: Merge Artifacts | ||
| uses: actions/upload-artifact/merge@v4 | ||
| with: | ||
| delete-merged: true | ||
| name: wheels | ||
| pattern: wheels-* | ||
|
|
||
| upload: | ||
| name: Upload wheels | ||
| runs-on: ubuntu-latest | ||
| needs: merge | ||
| steps: | ||
| - name: Upload wheels | ||
| if: github.event.inputs.upload == true | ||
| run: echo "TODO" | ||
|
|
||
| final: | ||
| name: Final CI | ||
| needs: [merge] | ||
| if: ${{ always() }} | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - name: Check if CI matrix is successful | ||
| if: >- | ||
| ${{ | ||
| contains(needs.*.result, 'failure') | ||
| || contains(needs.*.result, 'cancelled') | ||
| || contains(needs.*.result, 'skipped') | ||
| }} | ||
| run: exit 1 |
Oops, something went wrong.