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alzaia authored Jul 18, 2016
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Expand Up @@ -9,10 +9,14 @@ Segment axon and myelin from microscopy data. Written in Matlab.

3 - Run the script SegmentationGUI

The main GUI is also available on Matlab File Exchange (https://www.mathworks.com/matlabcentral/fileexchange/53840-axonseg).

## Tutorials

Link to video demo (SegmentationGUI.m): https://github.com/neuropoly/axonseg/releases/download/v2.1/Axon_Segmentation_GUI_Quick_Overview.mp4.

After installation, run the as_tutorial.m script line by line to get a better understanding of AxonSeg.

Old tutorials:
* **SegmentationGUI**: Segment using Graphical interface --> https://drive.google.com/open?id=0B2Xe6kvfjHHnLVE1N2lMYktWMGM
* **myelinInitialSegmention** : Segment myelin using axon segmentation as input --> https://drive.google.com/open?id=0B2Xe6kvfjHHncWVRMG5mS3JZQUE
Expand All @@ -25,6 +29,6 @@ Old tutorials:

**Reference**: Bégin, S., Dupont-Therrien, O., Bélanger, E., Daradich, A., Laffray, S., De Koninck, Y., Côté, D.C., 2014. Automated method for the segmentation and morphometry of nerve fibers in large-scale CARS images of spinal cord tissue. Biomed. Opt. Express, BOE 5, 4145–4161.

Copyright (c) 2015 NeuroPoly (Polytechnique Montreal) and DCClab (Université Laval)
Copyright (c) 2016 NeuroPoly (Polytechnique Montreal) and DCClab (Université Laval)


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