Merge pull request #215 from luslab/dev

Updates
nf-core · Oct 23, 2023 · 1798764 · 1798764
2 parents 113c864 + bae0b92
commit 1798764
Showing 1 changed file with 4 additions and 4 deletions.
diff --git a/workflows/cutandrun.nf b/workflows/cutandrun.nf
@@ -380,8 +380,8 @@ workflow CUTANDRUN {
             ch_samtools_bam,
             ch_samtools_bai,
             params.dedup_target_reads,
-            PREPARE_GENOME.out.fasta,
-            PREPARE_GENOME.out.fasta_index
+            PREPARE_GENOME.out.fasta.collect(),
+            PREPARE_GENOME.out.fasta_index.collect()
         )
         ch_samtools_bam      = DEDUPLICATE_PICARD.out.bam
         ch_samtools_bai      = DEDUPLICATE_PICARD.out.bai
@@ -418,8 +418,8 @@ workflow CUTANDRUN {
         DEDUPLICATE_LINEAR (
             ch_samtools_bam,
             ch_samtools_bai,
-            PREPARE_GENOME.out.fasta,
-            PREPARE_GENOME.out.fasta_index,
+            PREPARE_GENOME.out.fasta.collect(),
+            PREPARE_GENOME.out.fasta_index.collect(),
             params.dedup_target_reads,
             ch_linear_duplication_header_multiqc
         )