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update qualimap paths in nftignore
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@sateeshperi
sateeshperi committed Dec 9, 2024
1 parent 5d8cc4b commit 1e77463
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Showing 3 changed files with 18 additions and 253 deletions.
31 changes: 16 additions & 15 deletions tests/.nftignore
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@@ -1,21 +1,22 @@
{bismark,bismark_hisat}/alignments/logs/*.txt
{bismark,bismark_hisat,bwameth}/{alignments,deduplicated}/*.{bam,bam.bai}
{bismark,bismark_hisat}/deduplicated/logs/*.txt
{bismark,bismark_hisat}/{reports,summary}/*.{html,txt}
bwameth/deduplicated/picard_metrics/*.txt
*/alignments/logs/*.txt
*/{alignments,deduplicated}/*.{bam,bam.bai}
*/deduplicated/logs/*.txt
*/{reports,summary}/*.{html,txt}
*/deduplicated/picard_metrics/*.txt
fastqc/*.html
fastqc/zips/*.zip
multiqc/{bismark,bismark_hisat,bwameth}/multiqc_data/*.{log,json}
multiqc/{bismark,bismark_hisat,bwameth}/multiqc_data/multiqc_fastqc.txt
multiqc/{bismark,bismark_hisat,bwameth}/multiqc_data/multiqc_general_stats.txt
multiqc/{bismark,bismark_hisat,bwameth}/multiqc_data/multiqc_qualimap_bamqc_genome_results.txt
multiqc/{bismark,bismark_hisat,bwameth}/multiqc_data/multiqc_software_versions.txt
multiqc/{bismark,bismark_hisat,bwameth}/multiqc_data/multiqc_sources.txt
multiqc/{bismark,bismark_hisat,bwameth}/multiqc_report.html
multiqc/{bismark,bismark_hisat,bwameth}/multiqc_plots/{pdf,png,svg}/*.{pdf,png,svg}
multiqc/*/multiqc_data/*.{log,json}
multiqc/*/multiqc_data/multiqc_fastqc.txt
multiqc/*/multiqc_data/multiqc_general_stats.txt
multiqc/*/multiqc_data/multiqc_qualimap_bamqc_genome_results.txt
multiqc/*/multiqc_data/multiqc_software_versions.txt
multiqc/*/multiqc_data/multiqc_sources.txt
multiqc/*/multiqc_report.html
multiqc/*/multiqc_plots/{pdf,png,svg}/*.{pdf,png,svg}
pipeline_info/*.{html,json,txt,yml}
{bismark,bismark_hisat,bwameth}/qualimap/bamqc/*/qualimapReport.html
qualimap/**/css/*
*/qualimap/bamqc/*/qualimapReport.html
*/qualimap/bamqc/**/*.{pdf,png,svg}
*/qualimap/bamqc/*/css/*
qualimap/**/images_qualimapReport/*
qualimap/**/raw_data_qualimapReport/*
trimgalore/fastqc/*.html
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133 changes: 1 addition & 132 deletions tests/bismark_run_qualimap.nf.test.snap
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Original file line number Diff line number Diff line change
Expand Up @@ -520,42 +520,7 @@
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Expand All @@ -567,39 +532,7 @@
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Expand All @@ -608,39 +541,7 @@
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Expand All @@ -649,39 +550,7 @@
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Expand Down Expand Up @@ -748,6 +617,6 @@
"nf-test": "0.9.2",
"nextflow": "24.10.2"
},
"timestamp": "2024-12-02T12:34:53.964190449"
"timestamp": "2024-12-09T23:38:20.640992232"
}
}
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