port parabricks/genotypegvcf to nf-test #17374
Triggered via pull request
November 18, 2024 10:21
famosab
Status
Failure
Total duration
4h 3m 32s
Artifacts
–
test.yml
on: pull_request
Matrix: nf-test-gpu
Matrix: nf-test
Matrix: nf-core-lint-modules
Matrix: nf-core-lint-modules
Matrix: pytest
confirm-pass
7s
Annotations
7 errors and 5 warnings
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nf-test-gpu (modules/nf-core/parabricks/fq2bam, docker_self_hosted, singularity)
Process completed with exit code 1.
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nf-test-gpu (modules/nf-core/parabricks/fq2bammeth, docker_self_hosted, singularity)
Process completed with exit code 1.
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nf-test-gpu (modules/nf-core/parabricks/genotypegvcf, docker_self_hosted, singularity)
Process completed with exit code 1.
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nf-test-gpu (modules/nf-core/parabricks/applybqsr, docker_self_hosted, singularity)
Process completed with exit code 1.
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nf-test
The runner has received a shutdown signal. This can happen when the runner service is stopped, or a manually started runner is canceled.
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nf-test
The operation was canceled.
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confirm-pass
Process completed with exit code 1.
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nf-test-gpu (modules/nf-core/parabricks/fq2bam, docker_self_hosted, singularity)
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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nf-test-gpu (modules/nf-core/parabricks/fq2bammeth, docker_self_hosted, singularity)
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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nf-test-gpu (modules/nf-core/parabricks/genotypegvcf, docker_self_hosted, singularity)
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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nf-test-gpu (modules/nf-core/parabricks/applybqsr, docker_self_hosted, singularity)
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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nf-test
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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