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chore: bump fgbio version #6978

Merged
merged 1 commit into from
Nov 13, 2024
Merged

chore: bump fgbio version #6978

merged 1 commit into from
Nov 13, 2024

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znorgaard
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@znorgaard znorgaard commented Nov 12, 2024

This PR updates the version of fgbio used in all fgbio modules to version 2.4.0. It also switches from biocontainers to Seqera containers.

PR checklist

  • This comment contains a description of changes (with reason).
  • Use Seqera Containers if possible to fulfil software requirements.
  • Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
    • For modules:
      • nf-core modules test <MODULE> --profile docker
      • nf-core modules test <MODULE> --profile singularity
      • nf-core modules test <MODULE> --profile conda

@mashehu mashehu added this pull request to the merge queue Nov 13, 2024
@github-merge-queue github-merge-queue bot removed this pull request from the merge queue due to failed status checks Nov 13, 2024
@mashehu mashehu added this pull request to the merge queue Nov 13, 2024
@github-merge-queue github-merge-queue bot removed this pull request from the merge queue due to failed status checks Nov 13, 2024
@mashehu mashehu added this pull request to the merge queue Nov 13, 2024
Merged via the queue into master with commit 8da5d81 Nov 13, 2024
57 checks passed
@mashehu mashehu deleted the zn_fgbio_bump branch November 13, 2024 08:26
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2 participants