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Important! Template update for nf-core/tools v2.13.1 #182

Merged
merged 4 commits into from
Mar 6, 2024
Merged

Important! Template update for nf-core/tools v2.13.1 #182

merged 4 commits into from
Mar 6, 2024

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Version 2.13.1 of nf-core/tools has just been released with updates to the nf-core template. This automated pull-request attempts to apply the relevant updates to this pipeline.

Please make sure to merge this pull-request as soon as possible, resolving any merge conflicts in the nf-core-template-merge-2.13.1 branch (or your own fork, if you prefer). Once complete, make a new minor release of your pipeline.

For instructions on how to merge this PR, please see https://nf-co.re/docs/contributing/sync/.

For more information about this release of nf-core/tools, please see the v2.13.1 release page.

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github-actions bot commented Mar 6, 2024 •
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nf-core lint overall result: Passed ✅ ⚠️

Posted for pipeline commit 9250435

+| ✅ 187 tests passed       |+
#| ❔   1 tests were ignored |#
!| ❗   6 tests had warnings |!

❗ Test warnings:

  • files_exist - File not found: conf/igenomes.config
  • readme - README contains the placeholder zenodo.XXXXXXX. This should be replaced with the zenodo doi (after the first release).
  • pipeline_todos - TODO string in README.md: Add full-sized test dataset and amend the paragraph below if applicable
  • pipeline_todos - TODO string in main.nf: Optionally add in-text citation tools to this list.
  • pipeline_todos - TODO string in main.nf: Optionally add bibliographic entries to this list.
  • pipeline_todos - TODO string in main.nf: Only uncomment below if logic in toolCitationText/toolBibliographyText has been filled!

❔ Tests ignored:

  • files_unchanged - File ignored due to lint config: assets/nf-core-pangenome_logo_light.png

✅ Tests passed:

Run details

  • nf-core/tools version 2.13.1
  • Run at 2024-03-06 14:42:51

@subwaystation subwaystation merged commit 2c3e231 into dev Mar 6, 2024
15 checks passed
@subwaystation subwaystation deleted the nf-core-template-merge-2.13.1 branch March 6, 2024 14:48
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@nf-core-bot @subwaystation