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Important! Template update for nf-core/tools v3.0.1 #374

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Important! Template update for nf-core/tools v3.0.1

Important! Template update for nf-core/tools v3.0.1 #374

Triggered via pull request October 11, 2024 13:12
@maxulyssemaxulysse
synchronize #152
nf-core-template-merge-3.0.1
Status Failure
Total duration 2m 18s
Artifacts 1

linting.yml

on: pull_request
pre-commit
17s
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nf-core
2m 8s
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53 errors and 1 warning
nf-core
Process completed with exit code 1.
Test Functions.Test Function checkConfigProvided: Test Functions#L1
Assertion failed: 2 of 2 assertions failed
Test Functions.Test Function without logColours: Test Functions#L1
Assertion failed: 2 of 2 assertions failed
Test Workflow UTILS_NEXTFLOW_PIPELINE.Should print version: Test Workflow UTILS_NEXTFLOW_PIPELINE#L1
Assertion failed: 2 of 2 assertions failed
Test Subworkflow UTILS_NFSCHEMA_PLUGIN.Should validate params: Test Subworkflow UTILS_NFSCHEMA_PLUGIN#L1
Assertion failed: 1 of 2 assertions failed
Test Workflow UTILS_NEXTFLOW_PIPELINE.Should run no inputs: Test Workflow UTILS_NEXTFLOW_PIPELINE#L1
Assertion failed: 1 of 1 assertions failed
Test Subworkflow UTILS_NFSCHEMA_PLUGIN.Should run nothing: Test Subworkflow UTILS_NFSCHEMA_PLUGIN#L1
Assertion failed: 1 of 1 assertions failed
Test Functions.Test Function getWorkflowVersion: Test Functions#L1
Assertion failed: 2 of 2 assertions failed
Test Functions.Test Function workflowCitation: Test Functions#L1
Assertion failed: 2 of 2 assertions failed
Test Functions.Test Function checkCondaChannels: Test Functions#L1
Assertion failed: 1 of 2 assertions failed
Test Functions.Test Function dashedLine: Test Functions#L1
Assertion failed: 2 of 2 assertions failed
Test Workflow UTILS_NEXTFLOW_PIPELINE.Should run no inputs: Test Workflow UTILS_NEXTFLOW_PIPELINE#L1
Assertion failed: 1 of 1 assertions failed
Test Subworkflow UTILS_NFSCHEMA_PLUGIN.Should run nothing: Test Subworkflow UTILS_NFSCHEMA_PLUGIN#L1
Assertion failed: 1 of 1 assertions failed
Test Workflow UTILS_NEXTFLOW_PIPELINE.Should dump params: Test Workflow UTILS_NEXTFLOW_PIPELINE#L1
Assertion failed: 1 of 1 assertions failed
Test Subworkflow UTILS_NFSCHEMA_PLUGIN.Should run nothing - custom schema: Test Subworkflow UTILS_NFSCHEMA_PLUGIN#L1
Assertion failed: 1 of 1 assertions failed
Test Functions.Test Function dumpParametersToJSON: Test Functions#L1
Assertion failed: 1 of 1 assertions failed
Test Functions.Test Function nfCoreLogo: Test Functions#L1
Assertion failed: 2 of 2 assertions failed
Test Functions.Test Function checkConfigProvided: Test Functions#L1
Assertion failed: 2 of 2 assertions failed
Test Functions.Test Function without logColours: Test Functions#L1
Assertion failed: 2 of 2 assertions failed
Test Workflow UTILS_NEXTFLOW_PIPELINE.Should not create params JSON if no output directory: Test Workflow UTILS_NEXTFLOW_PIPELINE#L1
Assertion failed: 1 of 1 assertions failed
Test Subworkflow UTILS_NFSCHEMA_PLUGIN.Should validate params - custom schema: Test Subworkflow UTILS_NFSCHEMA_PLUGIN#L1
Assertion failed: 1 of 2 assertions failed
Test Functions.Test Function getWorkflowVersion: Test Functions#L1
Assertion failed: 2 of 2 assertions failed
Test Functions.Test Function workflowCitation: Test Functions#L1
Assertion failed: 2 of 2 assertions failed
Test Functions.Test Function dumpParametersToJSON: Test Functions#L1
Assertion failed: 1 of 1 assertions failed
Test Functions.Test Function nfCoreLogo: Test Functions#L1
Assertion failed: 2 of 2 assertions failed
Test Workflow UTILS_NEXTFLOW_PIPELINE.Should run no inputs: Test Workflow UTILS_NEXTFLOW_PIPELINE#L1
Assertion failed: 1 of 1 assertions failed
Test Subworkflow UTILS_NFSCHEMA_PLUGIN.Should run nothing: Test Subworkflow UTILS_NFSCHEMA_PLUGIN#L1
Assertion failed: 1 of 1 assertions failed
Test Functions.Test Function checkConfigProvided: Test Functions#L1
Assertion failed: 2 of 2 assertions failed
Test Functions.Test Function without logColours: Test Functions#L1
Assertion failed: 2 of 2 assertions failed
Test Workflow UTILS_NEXTFLOW_PIPELINE.Should dump params: Test Workflow UTILS_NEXTFLOW_PIPELINE#L1
Assertion failed: 1 of 1 assertions failed
Test Subworkflow UTILS_NFSCHEMA_PLUGIN.Should run nothing - custom schema: Test Subworkflow UTILS_NFSCHEMA_PLUGIN#L1
Assertion failed: 1 of 1 assertions failed
Test Functions.Test Function checkCondaChannels: Test Functions#L1
Assertion failed: 1 of 2 assertions failed
Test Functions.Test Function dashedLine: Test Functions#L1
Assertion failed: 2 of 2 assertions failed
Test Workflow UTILS_NEXTFLOW_PIPELINE.Should run no inputs: Test Workflow UTILS_NEXTFLOW_PIPELINE#L1
Assertion failed: 1 of 1 assertions failed
Test Subworkflow UTILS_NFSCHEMA_PLUGIN.Should run nothing: Test Subworkflow UTILS_NFSCHEMA_PLUGIN#L1
Assertion failed: 1 of 1 assertions failed
Test Workflow UTILS_NEXTFLOW_PIPELINE.Should print version: Test Workflow UTILS_NEXTFLOW_PIPELINE#L1
Assertion failed: 2 of 2 assertions failed
Test Subworkflow UTILS_NFSCHEMA_PLUGIN.Should validate params: Test Subworkflow UTILS_NFSCHEMA_PLUGIN#L1
Assertion failed: 1 of 2 assertions failed
Test Functions.Test Function getWorkflowVersion: Test Functions#L1
Assertion failed: 2 of 2 assertions failed
Test Functions.Test Function workflowCitation: Test Functions#L1
Assertion failed: 2 of 2 assertions failed
Test Workflow UTILS_NEXTFLOW_PIPELINE.Should not create params JSON if no output directory: Test Workflow UTILS_NEXTFLOW_PIPELINE#L1
Assertion failed: 1 of 1 assertions failed
Test Subworkflow UTILS_NFSCHEMA_PLUGIN.Should validate params - custom schema: Test Subworkflow UTILS_NFSCHEMA_PLUGIN#L1
Assertion failed: 1 of 2 assertions failed
Test Workflow UTILS_NEXTFLOW_PIPELINE.Should dump params: Test Workflow UTILS_NEXTFLOW_PIPELINE#L1
Assertion failed: 1 of 1 assertions failed
Test Subworkflow UTILS_NFSCHEMA_PLUGIN.Should run nothing - custom schema: Test Subworkflow UTILS_NFSCHEMA_PLUGIN#L1
Assertion failed: 1 of 1 assertions failed
Test Functions.Test Function checkConfigProvided: Test Functions#L1
Assertion failed: 2 of 2 assertions failed
Test Functions.Test Function without logColours: Test Functions#L1
Assertion failed: 2 of 2 assertions failed
Test Functions.Test Function checkCondaChannels: Test Functions#L1
Assertion failed: 1 of 2 assertions failed
Test Functions.Test Function dashedLine: Test Functions#L1
Assertion failed: 2 of 2 assertions failed
Test Workflow UTILS_NEXTFLOW_PIPELINE.Should print version: Test Workflow UTILS_NEXTFLOW_PIPELINE#L1
Assertion failed: 2 of 2 assertions failed
Test Subworkflow UTILS_NFSCHEMA_PLUGIN.Should validate params: Test Subworkflow UTILS_NFSCHEMA_PLUGIN#L1
Assertion failed: 1 of 2 assertions failed
Test Workflow UTILS_NEXTFLOW_PIPELINE.Should not create params JSON if no output directory: Test Workflow UTILS_NEXTFLOW_PIPELINE#L1
Assertion failed: 1 of 1 assertions failed
Test Subworkflow UTILS_NFSCHEMA_PLUGIN.Should validate params - custom schema: Test Subworkflow UTILS_NFSCHEMA_PLUGIN#L1
Assertion failed: 1 of 2 assertions failed
Test Functions.Test Function dumpParametersToJSON: Test Functions#L1
Assertion failed: 1 of 1 assertions failed
Test Functions.Test Function nfCoreLogo: Test Functions#L1
Assertion failed: 2 of 2 assertions failed
nf-core
The following actions use a deprecated Node.js version and will be forced to run on node20: pietrobolcato/[email protected]. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/

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