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Merge pull request #1395 from allaway/patch-1
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fix dead link
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maxulysse authored Feb 14, 2024
2 parents ebcab27 + 6b32335 commit a56f0be
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2 changes: 1 addition & 1 deletion README.md
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Expand Up @@ -41,7 +41,7 @@ Depending on the options and samples provided, the pipeline can currently perfor
- Map Reads to Reference (`BWA-mem`, `BWA-mem2`, `dragmap` or `Sentieon BWA-mem`)
- Process BAM file (`GATK MarkDuplicates`, `GATK BaseRecalibrator` and `GATK ApplyBQSR` or `Sentieon LocusCollector` and `Sentieon Dedup`)
- Summarise alignment statistics (`samtools stats`, `mosdepth`)
- Variant calling (enabled by `--tools`, see [compatibility](#which-variant-calling-tool-is-implemented-for-which-data-type)):
- Variant calling (enabled by `--tools`, see [compatibility](https://nf-co.re/sarek/latest/docs/usage#which-variant-calling-tool-is-implemented-for-which-data-type)):
- `ASCAT`
- `CNVkit`
- `Control-FREEC`
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