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Sarek 2.7 - Pårte
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@maxulysse maxulysse released this 26 Jan 14:46
· 6678 commits to master since this release
2.7
7ccfb36
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Learn about vigilant mode.
  • Add UMI annotation and consensus functionality to Sarek (#145)
  • Add ignore_soft_clipped_bases option for GATK Mutect2 (#230)
  • Add --aligner to choose between bwa and bwa-mem2 (#237, #282)
  • Add WES and tumor-only mode for Control-FREEC (#302, #304)
  • Update Control-FREEC from 11.5 to 11.6
  • --no_gatk_spark is now removed, use --use_gatk_spark if you want to use GATK Spark
  • --no_gvcf is now removed, use --generate_gvcf if you want *.g.vcf files from GATK HaplotypeCaller

See full CHANGELOG, for more information

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