Store UNTAR output in sample data/ subdirectory

nf-core · Dec 20, 2023 · 71b2d5f · 71b2d5f
1 parent 9766772
commit 71b2d5f
Showing 1 changed file with 9 additions and 1 deletion.
diff --git a/conf/modules.config b/conf/modules.config
@@ -32,7 +32,15 @@ process {
         ]
     }
 
-    // store sample-specifc results in the per-sample subfolder
+    // Store sample-specific results in per-sample subfolders
+    withName: 'UNTAR_SPACERANGER_INPUT|UNTAR_DOWNSTREAM_INPUT' {
+        publishDir = [
+            path: { "${params.outdir}/${meta.id}/data/untar" },
+            mode: params.publish_dir_mode,
+            saveAs: { filename -> filename.equals('versions.yml') ? null : filename }
+        ]
+    }
+
     withName: FASTQC {
         publishDir = [
             path: { "${params.outdir}/${meta.id}/${task.process.tokenize(':')[-1].tokenize('_')[0].toLowerCase()}" },