Update Multiqc to the latest

nf-core · Aug 28, 2024 · 2b1afc4 · 2b1afc4
1 parent 65dbe75
commit 2b1afc4
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Showing 9 changed files with 53 additions and 16 deletions.
diff --git a/modules.json b/modules.json
@@ -192,7 +192,7 @@
                     },
                     "multiqc": {
                         "branch": "master",
-                        "git_sha": "b7ebe95761cd389603f9cc0e0dc384c0f663815a",
+                        "git_sha": "fe9614c5d1d9820dae56a5e30a07ba336db45835",
                         "installed_by": ["modules"]
                     },
                     "nanoq": {

diff --git a/modules/nf-core/multiqc/environment.yml b/modules/nf-core/multiqc/environment.yml
diff --git a/modules/nf-core/multiqc/main.nf b/modules/nf-core/multiqc/main.nf
diff --git a/modules/nf-core/multiqc/meta.yml b/modules/nf-core/multiqc/meta.yml
diff --git a/modules/nf-core/multiqc/tests/main.nf.test b/modules/nf-core/multiqc/tests/main.nf.test
diff --git a/modules/nf-core/multiqc/tests/main.nf.test.snap b/modules/nf-core/multiqc/tests/main.nf.test.snap
diff --git a/modules/nf-core/multiqc/tests/nextflow.config b/modules/nf-core/multiqc/tests/nextflow.config
diff --git a/nextflow_schema.json b/nextflow_schema.json
@@ -603,7 +603,8 @@
                     "type": "string",
                     "description": "Specify the taxonomic report the ganon report file should display.",
                     "help_text": "Specify the taxonomic rank level to report each taxonomic hit as. `all` will specify all ranks, however you can customise this from `superkingdom` through to `species` to as specific as `assembly`. ganon has a default preset, however you can customise the specific ranks in a comma separated list, e.g. `--ganon_report_rank [phylum,genus,species]`.\n\nSee the [ganon documentation](https://pirovc.github.io/ganon/outputfiles/#ganon-report) for more information of each option.\n\n> Modifies tool parameter(s):\n- ganon report: `--ranks`",
-                    "fa_icon": "fas fa-sort-amount-down-alt"
+                    "fa_icon": "fas fa-sort-amount-down-alt",
+                    "default": "default"
                 },
                 "ganon_report_toppercentile": {
                     "type": "integer",

diff --git a/workflows/taxprofiler.nf b/workflows/taxprofiler.nf
@@ -415,7 +415,9 @@ workflow TAXPROFILER {
         ch_multiqc_files.collect(),
         ch_multiqc_config.toList(),
         ch_multiqc_custom_config.toList(),
-        ch_multiqc_logo.toList()
+        ch_multiqc_logo.toList(),
+        [],
+        []
     )
 
     emit: