update tower.yml

tower.yml

@@ -2,58 +2,58 @@ reports:
   multiqc_report.html:
     display: "MultiQC HTML report"
   "**/fastqc/raw/*.html":
-    display: "A FastQC report contains quality metrics of raw reads in HTML format."
+    display: "A FastQC report containing quality metrics of raw reads in HTML format."
   "**/fastqc/raw/*.txt":
     display: "A FastQC report containing quality metrics of raw reads in TXT format."
   "**/fastqc/preprocessed/*.html":
-    display: "A FastQC report contains quality metrics of processed reads in HTML format."
+    display: "A FastQC report containing quality metrics of processed reads in HTML format."
   "**/fastqc/preprocessed/*.txt":
     display: "A FastQC report containing quality metrics of processed reads in TXT format."
   "**/falco/raw/*.html":
-    display: "A Falco report contains quality metrics of raw reads in HTML format."
+    display: "A Falco report containing quality metrics of raw reads in HTML format."
   "**/falco/raw/*.txt":
     display: "A Falco report containing quality metrics of raw reads in TXT format."
   "**/falco/preprocessed/*.html":
-    display: "A Falco report contains quality metrics of raw reads in HTML format."
+    display: "A Falco report containing quality metrics of processed reads in HTML format."
   "**/falco/preprocessed/*.txt":
-    display: "A Falco report containing quality metrics of raw reads in TXT format."
+    display: "A Falco report containing quality metrics of processed reads in TXT format."
   "**/fastp/*.html":
     display: "A Log file in HTML format."
   "**/bracken/*_combined_reports.txt":
-    display: "Combined bracken results as output from Bracken's `combine_bracken_outputs.py` script."
+    display: "Combined bracken results as output from Bracken's combine_bracken_outputs.py script."
   "**/bracken/*/*.tsv":
     display: "A TSV file containing per-sample summary of Bracken results with abundance information."
   "**/bracken/*/*report_bracken_species.txt":
     display: "A Kraken2 style report with Bracken abundance information."
   "**/kraken2/kraken2_*_combined_reports.txt":
-    display: "A combined profile of all samples aligned to a given database (as generated by `krakentools`)."
+    display: "A combined profile of all samples aligned to a given database (as generated by krakentools)."
   "**/kraken2/*/*.kraken2.report.txt":
-    display: "A Kraken2 report that summarises the fraction abundance, taxonomic ID, number of Kmers, taxonomic path of all the hits in the Kraken2 run for a given sample. Will be 6 column rather than 8 if `--save_minimizers` specified."
+    display: "A Kraken2 report that summarises the fraction abundance, taxonomic ID, number of Kmers, taxonomic path of all the hits in the Kraken2 run for a given sample. Will be 6 column rather than 8 if --save_minimizers specified."
   "**/krakenuniq/*.krakenuniq.report.txt":
     display: "A Kraken2-style report that summarises the fraction abundance, taxonomic ID, number of Kmers, taxonomic path of all the hits, with an additional column for k-mer coverage, that allows for more accurate distinguishing between false-positive/true-postitive hits."
   "**/krakenuniq/*.krakenuniq.classified.txt":
     display: "An optional list of read IDs and the hits each read had against each database for a given sample."
   "**/centrifuge/*_combined_reports.txt":
-    display: "A combined profile of all samples aligned to a given database (as generated by `centrifuge-kreport`)."
+    display: "A combined profile of all samples aligned to a given database (as generated by centrifuge-kreport)."
   "**/centrifuge/*/*.centrifuge.report.txt":
     display: "A classification report that summarises the taxonomic ID, the taxonomic rank, length of genome sequence, number of classified and uniquely classified reads."
   "**/centrifuge/*/*.centrifuge.txt":
     display: "A Kraken2-style report that summarises the fraction abundance, taxonomic ID, number of k-mers, taxonomic path of all the hits in the centrifuge run for a given sample."
   "**/ganon/*_combined_reports.txt":
-    display: "A combined profile of all samples aligned to a given database (as generated by `ganon table`)."
+    display: "A combined profile of all samples aligned to a given database (as generated by ganon table)."
   "**/kaiju/*_combined_reports.txt":
     display: "A combined profile of all samples aligned to a given database (as generated by kaiju2table)"
   "**/kaiju/*/*.kaijutable.txt":
-    display: "Summarised Kaiju output with fraction abundance, taxonomic ID, number of reads, and taxonomic names (as generated by `kaiju2table`)"
+    display: "Summarised Kaiju output with fraction abundance, taxonomic ID, number of reads, and taxonomic names (as generated by kaiju2table)"
   "**/krona/*.html":
     display: "Per-tool/per-database interactive HTML file containing hierarchical piecharts."
   "**/metaphlan/*/*_combined_reports.txt":
-    display: "A combined profile of all samples aligned to a given database (as generated by `metaphlan_merge_tables`)."
+    display: "A combined profile of all samples aligned to a given database (as generated by metaphlan_merge_tables)."
   "**/metaphlan/*/*.bowtie2out.txt":
-    display: "BowTie2 alignment information (can be re-used for skipping alignment when re-running MetaPhlAn with different parameters)."
+    display: "Bowtie2 alignment information (can be re-used for skipping alignment when re-running MetaPhlAn with different parameters)."
   "**/metaphlan/*/*_profile.txt":
     display: "A MetaPhlAn taxonomic profile including abundance estimates."
   "**/motus/*/*_combined_reports.txt":
-    display: "A combined profile of all samples aligned to a given database (as generated by `motus_merge`)."
+    display: "A combined profile of all samples aligned to a given database (as generated by motus_merge)."
   "**/taxpasta/*tsv":
     display: "Standardised taxon table containing multiple samples. The first column describes the taxonomy ID and the rest of the columns describe the read counts for each sample."