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Include Changes for specification V2.0.0 #105

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merged 49 commits into from
Jun 11, 2024
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5acfed0
xlsx: small adjustments to inputs and outputs
HLWeil Nov 17, 2023
aeae73e
loosen up arc.cwl constraint from MUST to SHOULD
HLWeil Dec 21, 2023
7d5df0e
add comment to annotation table
HLWeil Dec 21, 2023
a9bd993
add data path annotation section to ARC specification
HLWeil Dec 22, 2023
0d83c77
small change to data path annotation specification
HLWeil Dec 24, 2023
8c2bd48
clarify constraint for folder specific pattern
HLWeil Jan 2, 2024
0acd515
fix a typo in the STUDY CONTACTS table section
kMutagene Jan 9, 2024
94bb4f7
Merge pull request #90 from nfdi4plants/patch-2
HLWeil Jan 11, 2024
8f8b287
Merge pull request #83 from nfdi4plants/arc_cwl
HLWeil Jan 11, 2024
3e5ef5d
Merge pull request #85 from nfdi4plants/data_paths
HLWeil Jan 11, 2024
ae969c2
fix typos in isa-xlsx
HLWeil Jan 12, 2024
84aa6d6
Merge pull request #91 from nfdi4plants/typos
HLWeil Jan 22, 2024
591c24c
make annotation table comment refer only to table
HLWeil Jan 23, 2024
574f5dc
Merge pull request #84 from nfdi4plants/comment
HLWeil Jan 23, 2024
b336710
start inclusion of data selectors with some links
HLWeil Jan 23, 2024
91644ed
finish up first draft of new data columns
HLWeil Jan 24, 2024
6a4eefa
adjust examples according to data specification changes
HLWeil Jan 24, 2024
1f6e246
change Data Selector to Data Selector Format
HLWeil Jan 24, 2024
f02c087
wip validation specs
kMutagene Jan 24, 2024
0831e8d
add validation branch and targets file specs
kMutagene Jan 25, 2024
5f3acff
typo fix
kMutagene Jan 25, 2024
895261f
add missing arc-validate link
kMutagene Jan 25, 2024
d2a7d68
add a reference to git manual regarding orphan branches
kMutagene Jan 25, 2024
c385cae
remove unnecessary space
kMutagene Jan 25, 2024
350f07c
Add Validation section, Fix header levels
kMutagene Jan 30, 2024
9fa4574
spelling fixes
kMutagene Jan 31, 2024
115e8c7
fix missing link
kMutagene Jan 31, 2024
01d5483
Merge pull request #95 from nfdi4plants/validation-specs
kMutagene Feb 1, 2024
604a083
Merge pull request #93 from nfdi4plants/selector
HLWeil Feb 8, 2024
280fcf2
Add versioning of validation packages to validation_packages.yml
kMutagene Feb 13, 2024
57cbbcf
Merge pull request #96 from nfdi4plants/validation-specs
kMutagene Feb 16, 2024
077475a
let git do the cqc versioning, add optional version suffix in cqc fol…
kMutagene Feb 21, 2024
b66322d
Updated ARC RO-Crate Profile Description
floWetzels Feb 27, 2024
dd7aa52
fixed typos in RO-Crate profile description
floWetzels Feb 28, 2024
286053e
Merge pull request #100 from floWetzels/v2.0.0
HLWeil Feb 28, 2024
17ac78a
Merge pull request #98 from nfdi4plants/validation-specs
HLWeil Mar 4, 2024
4126940
make some sections in investigation and study metadata sheets optional
HLWeil Mar 6, 2024
4aa6718
Merge pull request #101 from nfdi4plants/isa-light
HLWeil Apr 2, 2024
afc66e9
add `arc_specification` key to `validation_packages.yml`
kMutagene Apr 23, 2024
a5a029c
add Datamap Table sheets section
HLWeil May 2, 2024
e8dd204
add datamap file section to isa-xlsx
HLWeil May 2, 2024
41d513f
reference datamap file from arc assay and study specifications
HLWeil May 2, 2024
3329352
add manage-issues github workflow
HLWeil Jun 6, 2024
2eb7da6
Merge pull request #104 from nfdi4plants/datamap
HLWeil Jun 6, 2024
070a9c2
Merge pull request #102 from nfdi4plants/validation-specs
HLWeil Jun 6, 2024
4b4c29c
Add validation_summary.json specs, package metadata, and ARC apps
kMutagene Jun 6, 2024
53439ef
typo fix
kMutagene Jun 7, 2024
ce7caab
Merge pull request #108 from nfdi4plants/validation-specs
HLWeil Jun 7, 2024
811870e
small changes and additions according to PR review for v2.0.0
HLWeil Jun 10, 2024
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31 changes: 31 additions & 0 deletions .github/workflows/manage-issues.yml
Original file line number Diff line number Diff line change
@@ -0,0 +1,31 @@
name: Manage issues

on:
issues:
types:
- opened
- reopened

jobs:
label_issues:
runs-on: ubuntu-latest
permissions:
issues: write
steps:
- run: gh issue edit "$NUMBER" --add-label "$LABELS"
env:
GH_TOKEN: ${{ secrets.GITHUB_TOKEN }}
GH_REPO: ${{ github.repository }}
NUMBER: ${{ github.event.issue.number }}
LABELS: "Status: Needs Triage"

add-to-project:
name: Add issue to project
runs-on: ubuntu-latest
steps:
- uses: actions/[email protected]
with:
# You can target a project in a different organization
# to the issue
project-url: https://github.com/orgs/nfdi4plants/projects/10
github-token: ${{ secrets.ADD_TO_PROJECT_PAT }}
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