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Update for v3.2.1
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nickjcroucher committed May 24, 2022
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# Change Log

## [v3.1.6](https://github.com/sanger-pathogens/gubbins/tree/v3.1.6) (2021-1-20)
## [v3.2.1](https://github.com/sanger-pathogens/gubbins/tree/v3.2.1) (2022-5-24)
[Full Changelog](https://github.com/sanger-pathogens/gubbins/compare/v3.1.6...v3.2.1)

- Fix problem with sequence reconstruction
- Improve detection of small recombinations by modifying window sizes
- Enable resumption of stalled analyses
- Clean C code
- Fixes to scripts
- Add CI tests and update expected results

## [v3.1.6](https://github.com/sanger-pathogens/gubbins/tree/v3.1.6) (2022-1-20)
[Full Changelog](https://github.com/sanger-pathogens/gubbins/compare/v3.1.5...v3.1.6)


- Fix problem with sequence reconstruction
- Add test for consistency of reconstructions

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