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ENH: add PET support to niworkflows #823

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merged 2 commits into from
Aug 28, 2023
Merged

ENH: add PET support to niworkflows #823

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3bc413f
ENH: add PET support to niworkflows
mnoergaard Aug 28, 2023
f688726
FIX: add pet to list of imtypes
mnoergaard Aug 28, 2023
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3 changes: 2 additions & 1 deletion niworkflows/interfaces/bids.py
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Original file line number Diff line number Diff line change
Expand Up @@ -225,6 +225,7 @@ class _BIDSDataGrabberOutputSpec(TraitedSpec):
roi = OutputMultiObject(desc="output ROI images")
t2w = OutputMultiObject(desc="output T2w images")
flair = OutputMultiObject(desc="output FLAIR images")
pet = OutputMultiObject(desc="output PET images")


class BIDSDataGrabber(SimpleInterface):
Expand Down Expand Up @@ -276,7 +277,7 @@ def _run_interface(self, runtime):
)
)

for imtype in ["bold", "t2w", "flair", "fmap", "sbref", "roi"]:
for imtype in ["bold", "t2w", "flair", "fmap", "sbref", "roi", "pet"]:
if not bids_dict[imtype]:
LOGGER.info(
'No "%s" images found for sub-%s', imtype, self.inputs.subject_id
Expand Down
1 change: 1 addition & 0 deletions niworkflows/utils/bids.py
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Expand Up @@ -233,6 +233,7 @@ def collect_data(
"t2w": {"datatype": "anat", "suffix": "T2w", "part": ["mag", None]},
"t1w": {"datatype": "anat", "suffix": "T1w", "part": ["mag", None]},
"roi": {"datatype": "anat", "suffix": "roi"},
"pet": {"suffix": "pet"}
}
bids_filters = bids_filters or {}
for acq, entities in bids_filters.items():
Expand Down