Merge pull request #375 from effigies/mnt/precommit

MNT: Add pre-commit config

.circleci/artifact_path

@@ -1 +1 @@
-/0/tmp/gh-pages/docs/_build/no_version_html/html/index.html
+/0/tmp/gh-pages/docs/_build/no_version_html/html/index.html

.circleci/config.yml

@@ -60,7 +60,7 @@ jobs:
       - checkout:
           path: /tmp/src/sdcflows
 
-      - run: 
+      - run:
           name: Configure git (pacify datalad)
           command: |
             git config --global user.name "First Last"

.github/workflows/pythonpackage.yml

@@ -47,7 +47,7 @@ jobs:
         source /tmp/buildenv/bin/activate
         python -m pip install -U build "setuptools >= 45" wheel "setuptools_scm >= 6.2" \
                               setuptools_scm_git_archive pip twine docutils
-        
+
         python -m build -s -w
         python -m twine check dist/sdcflows-*
         mv dist /tmp/package

.maint/MAINTAINERS.md

@@ -12,4 +12,3 @@ If you are participating because of your affiliation with another organization (
 | Esteban | Oscar | @oesteban | 0000-0001-8435-6191 | Lausanne University Hospital and University of Lausanne, Lausanne, Switzerland |
 | Goncalves | Mathias | @mgxd | 0000-0002-7252-7771 | Department of Psychology, Stanford University, CA, USA |
 | Markiewicz | Christopher J. | @effigies | 0000-0002-6533-164X | Department of Psychology, Stanford University, CA, USA |
-

.maint/PIs.md

@@ -14,4 +14,3 @@ If you are participating because of your affiliation with another organization (
 | Poldrack | Russell A. | @poldrack | 0000-0001-6755-0259 | Department of Psychology, Stanford University, CA, USA |
 | Satterthwaite | Theodore D. |  | 0000-0001-7072-9399 | Perelman School of Medicine, University of Pennsylvania, PA, USA |
 | Gorgolewski | Krzysztof J. | @chrisgorgo | 0000-0003-3321-7583 | Google LLC |
-

.pre-commit-config.yaml

@@ -0,0 +1,24 @@
+exclude: ".*/data/.*"
+repos:
+  - repo: https://github.com/pre-commit/pre-commit-hooks
+    rev: v4.4.0
+    hooks:
+      - id: check-added-large-files
+      - id: check-docstring-first
+      - id: check-merge-conflict
+      - id: check-json
+      - id: check-toml
+      - id: check-yaml
+      - id: debug-statements
+      - id: end-of-file-fixer
+      - id: fix-byte-order-marker
+      - id: trailing-whitespace
+  # Enable when no significant PRs are in progress
+  # - repo: https://github.com/psf/black
+  #   rev: 23.1.0
+  #   hooks:
+  #     - id: black
+  # - repo: https://github.com/pycqa/isort
+  #   rev: 5.12.0
+  #   hooks:
+  #     - id: isort

Makefile

@@ -15,4 +15,3 @@ docker:
 	--build-arg BUILD_DATE=`date -u +"%Y-%m-%dT%H:%M:%SZ"` \
 	--build-arg VCS_REF=`git rev-parse --short HEAD` \
 	--build-arg VERSION=`python setup.py --version` .
-

README.rst

@@ -13,7 +13,7 @@ SDCFlows
 .. image:: https://github.com/nipreps/sdcflows/workflows/Deps%20&%20CI/badge.svg
     :target: https://github.com/nipreps/sdcflows/actions
 
-SDCFlows (*Susceptibility Distortion Correction workFlows*) is a Python library of 
+SDCFlows (*Susceptibility Distortion Correction workFlows*) is a Python library of
 *NiPype*-based workflows to preprocess *B0* mapping data, estimate the corresponding
 fieldmap and finally correct for susceptibility distortions.
 Susceptibility-derived distortions are typically displayed by images acquired with EPI

docs/_static/css/version-switch.css

@@ -1,3 +1,3 @@
 .version-tree ul {
 	list-style-type: none;
-}
+}

docs/_static/js/version-switch.js

@@ -38,4 +38,4 @@ $(document).ready(function() {
     }).fail(function() {
       $("#version-menu").hide();  // JSON download failed - hide dropdown
     });
-});
+});

docs/links.rst

@@ -5,4 +5,4 @@
 .. _FSL: https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/
 .. _ANTs: https://stnava.github.io/ANTs/
 .. _AFNI: https://afni.nimh.nih.gov/
-.. _FreeSurfer: https://surfer.nmr.mgh.harvard.edu/
+.. _FreeSurfer: https://surfer.nmr.mgh.harvard.edu/

docs/tools/LICENSE.txt

@@ -4,4 +4,3 @@ https://www.mail-archive.com/[email protected]/msg02472.html
 
 and were released under a BSD/MIT license by Fernando Perez, Matthew Brett and
 the PyMVPA folks.  Further cleanups by the scikit-image crew.
-