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Add dataset, FHIR stores and annotations stores and related resources #71

Merged
merged 50 commits into from
Nov 18, 2020
Merged

Add dataset, FHIR stores and annotations stores and related resources #71

merged 50 commits into from
Nov 18, 2020

Commits on Nov 4, 2020

  1. Add Text, make Note extend Text, update date-annotator to take as inp… 

    …ut one note
    @tschaffter
    tschaffter committed Nov 4, 2020
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  2. The date annotator takes as input Text instead of Notes

    @tschaffter
    tschaffter committed Nov 4, 2020
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  3. Add post and get all datasets

    @tschaffter
    tschaffter committed Nov 4, 2020
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  4. Add get one dataset by id and delete one dataset

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    tschaffter committed Nov 4, 2020
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Commits on Nov 5, 2020

  1. Add annotation store

    @tschaffter
    tschaffter committed Nov 5, 2020
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  2. Add endpoints to manage annotations

    @tschaffter
    tschaffter committed Nov 5, 2020
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  3. Shave Annotation and DateAnnotation schemas from DB-related fields

    @tschaffter
    tschaffter committed Nov 5, 2020
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  4. Add note stores and notes

    @tschaffter
    tschaffter committed Nov 5, 2020
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  5. Date annotator now takes one Text object as input

    @tschaffter
    tschaffter committed Nov 5, 2020
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  6. Add StoredAnnotation and StoredDateAnnotation schemas

    @tschaffter
    tschaffter committed Nov 5, 2020
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Commits on Nov 6, 2020

  1. Add IBM OpenAPI Validator

    @tschaffter
    tschaffter committed Nov 6, 2020
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  2. Fix errors reported by IBM validators

    @tschaffter
    tschaffter committed Nov 6, 2020
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Commits on Nov 7, 2020

  1. Fix some warnings returned by IBM OpenAPI Validator

    @tschaffter
    tschaffter committed Nov 7, 2020
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  2. Fix operationIds

    @tschaffter
    tschaffter committed Nov 7, 2020
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  3. Fix pagination AllOf

    @tschaffter
    tschaffter committed Nov 7, 2020
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  4. Add missing descriptions

    @tschaffter
    tschaffter committed Nov 7, 2020
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  5. Fix last warnings returned by IBM validator for the data node API

    @tschaffter
    tschaffter committed Nov 7, 2020
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Commits on Nov 11, 2020

  1. Update before refactoring dataset endpoints

    @tschaffter
    tschaffter committed Nov 11, 2020
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  2. Add endpoints to create and list FHIR stores

    @tschaffter
    tschaffter committed Nov 11, 2020
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  3. Add endpoint to get and delete a FHIR store

    @tschaffter
    tschaffter committed Nov 11, 2020
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  4. Add endpoints to create and list FHIR patients

    @tschaffter
    tschaffter committed Nov 11, 2020
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  5. Add endpoints to get and delete a FHIR patient

    @tschaffter
    tschaffter committed Nov 11, 2020
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  6. Add endpoints to manipulate notes in FHIR store

    @tschaffter
    tschaffter committed Nov 11, 2020
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  7. Restore annotation store endpoints

    @tschaffter
    tschaffter committed Nov 11, 2020
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  8. Major update after introduction of readOnly

    @tschaffter
    tschaffter committed Nov 11, 2020
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  9. Keep only CI/CD for data-node for now

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    tschaffter committed Nov 11, 2020
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  10. Update annotation schemas

    @tschaffter
    tschaffter committed Nov 11, 2020
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Commits on Nov 13, 2020

  1. Dataset and store names are no longer readOnly

    @tschaffter
    tschaffter committed Nov 13, 2020
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  2. Array in page now named according to the type of objects

    @tschaffter
    tschaffter committed Nov 13, 2020
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  3. Successful post request now returns 201

    @tschaffter
    tschaffter committed Nov 13, 2020
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  4. Note path comes ../fhir/Note

    @tschaffter
    tschaffter committed Nov 13, 2020
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  5. Now returning paginated annotation stores

    @tschaffter
    tschaffter committed Nov 13, 2020
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Commits on Nov 14, 2020

  1. Update annotation schemas and endpoints

    @tschaffter
    tschaffter committed Nov 14, 2020
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  2. Add option to filter annotations to be returned by annotationType

    @tschaffter
    tschaffter committed Nov 14, 2020
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Commits on Nov 16, 2020

  1. Enable poster to set annotation id; rename PageResponse to ResponsePa… 

    …geMetadata
    @tschaffter
    tschaffter committed Nov 16, 2020
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  2. Text annotation object is now a property of the annotation record

    @tschaffter
    tschaffter committed Nov 16, 2020
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  3. Merge branch 'develop' into add-text-schema

    @tschaffter
    tschaffter authored Nov 16, 2020
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  4. Remove health endpoint from date annotator

    @tschaffter
    tschaffter committed Nov 16, 2020
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  5. Remove commons path health

    @tschaffter
    tschaffter committed Nov 16, 2020
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  6. Merge branch 'develop' into add-text-schema

    @tschaffter
    tschaffter authored Nov 16, 2020
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  7. Fix case sensitive issue

    @tschaffter
    tschaffter committed Nov 16, 2020
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  8. Fix date annotator API

    @tschaffter
    tschaffter committed Nov 16, 2020
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Commits on Nov 17, 2020

  1. Use Google bundle schema approach for Annotation

    @tschaffter
    tschaffter committed Nov 17, 2020
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  2. Make name of dataset and stores readOnly

    @tschaffter
    tschaffter committed Nov 17, 2020
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  3. The poster no longer specify an annotationId

    @tschaffter
    tschaffter committed Nov 17, 2020
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  4. Merge branch 'develop' into add-text-schema

    @tschaffter
    tschaffter authored Nov 17, 2020
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  5. Fix PageOfAnnotations

    @tschaffter
    tschaffter committed Nov 17, 2020
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  6. Add annotation examples

    @tschaffter
    tschaffter committed Nov 17, 2020
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  7. Merge branch 'add-text-schema' of github.com:Sage-Bionetworks/nlp-san… 

    …dbox-schemas into add-text-schema
    @tschaffter
    tschaffter committed Nov 17, 2020
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Commits on Nov 18, 2020

  1. Replace PageOfAnnotations.items by PageOfAnnotations.annotations

    @tschaffter
    tschaffter committed Nov 18, 2020
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