add nmfs-openscapes config

config/dhub/README.md

@@ -1,4 +1,4 @@
-To restart hub after changing `dconfig2.yaml`
+To restart hub after changing `dconfig-resource.yaml`
 ```
 helm upgrade --cleanup-on-fail --render-subchart-notes dhub dask/daskhub --namespace dhub --version=2023.1.0 --values dconfig-resource.yaml
 ```

config/nmfs-openscapes/profile.yml

@@ -0,0 +1,63 @@
+    image:
+      name: ghcr.io/nmfs-opensci/container-images/py-rocket-geospatial:latest
+      tag: 6ee57a9
+      pullPolicy: Always
+    profileList:
+      - display_name: "Select image and RAM"
+        description: &profile_list_description "Start a container with at least a chosen share of capacity on a node of this type"
+        default: true
+        slug: small
+        profile_options:
+          image: &profile_options_image
+            display_name: Image
+            choices:
+              python:
+                display_name: Py - Openscapes Python 39dffde
+                slug: python
+                kubespawner_override:
+                  image: openscapes/python:39dffde
+              pyrbase:
+                display_name: Py-R - base image 4.4-3.10
+                slug: pyrbase
+                kubespawner_override:
+                  image: ghcr.io/nmfs-opensci/container-images/py-rocket-base:latest
+              pyrgeo:
+                display_name: Py-R - Base geospatial image - py-rocket-geospatial latest
+                slug: pyrgeo
+                default: true
+                kubespawner_override:
+                  image: ghcr.io/nmfs-opensci/container-images/py-rocket-geospatial:latest
+              coastwatch:
+                display_name: Py-R - CoastWatch - nmfs-opensci coastwatch latest
+                slug: coastwatch
+                kubespawner_override:
+                  image: ghcr.io/nmfs-opensci/container-images/coastwatch:latest
+              aomlomics:
+                display_name: Py - Tourmaline Snakemake workflow for QIIME 2 v.2023.5
+                slug: aomlomics
+                kubespawner_override:
+                  image: ghcr.io/nmfs-opensci/container-images/aomlomics-jh:latest
+              iorocker:
+                display_name: R - R geospatial w sdmTMB - r-geospatial-sdm latest
+                slug: rgeospatialsdm
+                kubespawner_override:
+                  image: ghcr.io/nmfs-opensci/container-images/r-geospatial-sdm:latest
+              echopype:
+                display_name: Py - Echopype with pangeo nmfs-opensci echopype latest
+                slug: echopype
+                kubespawner_override:
+                  image: ghcr.io/nmfs-opensci/container-images/echopype:latest
+              arcgis:
+                display_name: Py - ArcGIS Python 3.9
+                slug: arcgis
+                kubespawner_override:
+                  image: ghcr.io/nmfs-opensci/container-images/arcgis:latest
+              cboettig:
+                display_name: Py-R - NASA TOPS - boettiger-lab nasa-tops latest
+                slug: cboettig
+                kubespawner_override:
+                  image: ghcr.io/boettiger-lab/nasa-tops:latest 
+              vast:
+                display_name: R - VAST with TMB - nmfs-opensci vast latest
+                kubespawner_override:
+                  image: ghcr.io/nmfs-opensci/container-images/vast:latest

posts/tips.Rmd

@@ -53,7 +53,7 @@ https://nmfs-opensci.github.io/nmfs-jhub/posts/JHub-User-Guide.html#using-your-o
 * If a pod is stuck with a Pending or ContainerCreating status, diagnose with: `kubectl --namespace=jhubk8 describe pod <name of pod>`
 * If a pod keeps restarting, diagnose with: `kubectl --namespace=jhubk8 logs --previous <name of pod>`
 * Delete a pod `kubectl --namespace=jhubk8 delete pod <name of pod>`
-* If it says a containter is the problem `kubectl --namespace=dhub logs --previous hub-5f5d96968d-z59bx -c git-clone-templates`
+* If it says a container is the problem `kubectl --namespace=dhub logs --previous hub-5f5d96968d-z59bx -c git-clone-templates`
 * Verify an external IP is provided for the k8s Service proxy-public. `kubectl --namespace=jhubk8 get service proxy-public`
 * If the external ip remains Pending, diagnose with: `kubectl --namespace=jhubk8 describe service proxy-public`
 * Get info on persistent volumes. Sometimes hang if there is a disconnect between node region/zone and pv region/zone