Update Dockerfile

Dockerfile

@@ -1,89 +1,4 @@
-# syntax=docker/dockerfile:1
-# Dockerfile for base image of all pangeo images
-FROM ubuntu:22.04
-# build file for pangeo images
-
-# Setup environment to match variables set by repo2docker as much as possible
-# The name of the conda environment into which the requested packages are installed
-ENV CONDA_ENV=notebook \
-    # Tell apt-get to not block installs by asking for interactive human input
-    DEBIAN_FRONTEND=noninteractive \
-    # Set username, uid and gid (same as uid) of non-root user the container will be run as
-    NB_USER=jovyan \
-    NB_UID=1000 \
-    # Use /bin/bash as shell, not the default /bin/sh (arrow keys, etc don't work then)
-    SHELL=/bin/bash \
-    # Setup locale to be UTF-8, avoiding gnarly hard to debug encoding errors
-    LANG=C.UTF-8  \
-    LC_ALL=C.UTF-8 \
-    # Install conda in the same place repo2docker does
-    CONDA_DIR=/srv/conda
-
-# All env vars that reference other env vars need to be in their own ENV block
-# Path to the python environment where the jupyter notebook packages are installed
-ENV NB_PYTHON_PREFIX=${CONDA_DIR}/envs/${CONDA_ENV} \
-    # Home directory of our non-root user
-    HOME=/home/${NB_USER}
-
-# Add both our notebook env as well as default conda installation to $PATH
-# Thus, when we start a `python` process (for kernels, or notebooks, etc),
-# it loads the python in the notebook conda environment, as that comes
-# first here.
-ENV PATH=${NB_PYTHON_PREFIX}/bin:${CONDA_DIR}/bin:${PATH}
-
-# Ask dask to read config from ${CONDA_DIR}/etc rather than
-# the default of /etc, since the non-root jovyan user can write
-# to ${CONDA_DIR}/etc but not to /etc
-ENV DASK_ROOT_CONFIG=${CONDA_DIR}/etc
-
-RUN echo "Creating ${NB_USER} user..." \
-    # Create a group for the user to be part of, with gid same as uid
-    && groupadd --gid ${NB_UID} ${NB_USER}  \
-    # Create non-root user, with given gid, uid and create $HOME
-    && useradd --create-home --gid ${NB_UID} --no-log-init --uid ${NB_UID} ${NB_USER} \
-    # Make sure that /srv is owned by non-root user, so we can install things there
-    && chown -R ${NB_USER}:${NB_USER} /srv
-
-# Run conda activate each time a bash shell starts, so users don't have to manually type conda activate
-# Note this is only read by shell, but not by the jupyter notebook - that relies
-# on us starting the correct `python` process, which we do by adding the notebook conda environment's
-# bin to PATH earlier ($NB_PYTHON_PREFIX/bin)
-RUN echo ". ${CONDA_DIR}/etc/profile.d/conda.sh ; conda activate ${CONDA_ENV}" > /etc/profile.d/init_conda.sh
-
-# Install basic apt packages
-RUN echo "Installing Apt-get packages..." \
-    && apt-get update --fix-missing > /dev/null \
-    && apt-get install -y apt-utils wget zip tzdata > /dev/null \
-    && apt-get clean \
-    && rm -rf /var/lib/apt/lists/*
-
-# Add TZ configuration - https://github.com/PrefectHQ/prefect/issues/3061
-ENV TZ=UTC
-# ========================
-
-USER ${NB_USER}
-WORKDIR ${HOME}
-
-# Install latest mambaforge in ${CONDA_DIR}
-RUN echo "Installing Miniforge..." \
-    && URL="https://github.com/conda-forge/miniforge/releases/latest/download/Miniforge3-Linux-$(uname -m).sh" \
-    && wget --quiet ${URL} -O installer.sh \
-    && /bin/bash installer.sh -u -b -p ${CONDA_DIR} \
-    && rm installer.sh \
-    && mamba install conda-lock -y \
-    && mamba clean -afy \
-    # After installing the packages, we cleanup some unnecessary files
-    # to try reduce image size - see https://jcristharif.com/conda-docker-tips.html
-    # Although we explicitly do *not* delete .pyc files, as that seems to slow down startup
-    # quite a bit unfortunately - see https://github.com/2i2c-org/infrastructure/issues/2047
-    && find ${CONDA_DIR} -follow -type f -name '*.a' -delete
-
-EXPOSE 8888
-ENTRYPOINT ["/srv/start"]
-
-### END OF BASE IMAGE
-
-### APPENDIX
+FROM ghcr.io/nmfs-opensci/py-rocket-base/base-image:latest
 
 USER root
 
@@ -117,9 +32,6 @@ RUN PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin && \
     chmod +x ${REPO_DIR}/rocker.sh && \
     ${REPO_DIR}/rocker.sh
 
-# Install test conda packages
-RUN /pyrocket_scripts/install-conda-packages.sh ${REPO_DIR}/test.yml
-
 # Install extra apt packages
 # Install linux packages after R installation since the R install scripts get rid of packages
 RUN /pyrocket_scripts/install-apt-packages.sh ${REPO_DIR}/apt.txt