Merge pull request #61 from bquilain/nuPRISM/develop

bquilain/hybridPMT (HK) merge to nuPRISM (IWCD) repo

.gitignore

@@ -1,8 +1,8 @@
 # GNU make and CMake in-place build results to ignore
-WCSimRootDict.cxx
-WCSimRootDict.h
+*WCSimRootDict*
+!src/*WCSimRootDict*
 libWCSim.a
-libWCSimRoot.so
+libWCSimRoot.*
 make.rootcint.result
 make.result
 make.out.txt
@@ -36,3 +36,8 @@ geofile.txt
 
 ## compiled python scripts to ignore
 *.pyc
+
+## ignore solar 
+data_solar/
+include/WCSimGenerator_Solar.hh
+src/WCSimGenerator_Solar.cc

CMakeLists.txt

@@ -1,4 +1,5 @@
 ## Based on CMakeLists.txt from AnaEx02 in examples/extended of Geant4.9.6 ##
+## Modified for ROOT6 support on 2020/11/26 by Guillaume Pronost
 #----------------------------------------------------------------------------
 # Setup the project
 cmake_minimum_required(VERSION 2.8.10 FATAL_ERROR)
@@ -13,12 +14,14 @@ endif()
 # Find ROOT (required package) in CONFIG mode. Looking for ROOTConfig.cmake.
 # Crucial for loading the proper definitions!
 #
-find_package(ROOT CONFIG REQUIRED)
+find_package(ROOT COMPONENTS CONFIG REQUIRED)
 if(NOT ROOT_FOUND)
   message(STATUS "ROOT package not found.") 
   return()
 endif()
 
+message(STATUS "ROOT VERSION ${ROOT_VERSION}")
+
 ## Load macros: need to compile ROOT through cmake first and execute bin/thisroot.sh
 include(${ROOT_USE_FILE})
 
@@ -27,7 +30,7 @@ include(${ROOT_USE_FILE})
 # ## NOT NEEDED FOR DICT
 include_directories(${PROJECT_SOURCE_DIR}/include 
                     ${Geant4_INCLUDE_DIR}
-                    ${ROOT_INCLUDE_DIR})
+                    ${ROOT_INCLUDE_DIRS})
 
 #----------------------------------------------------------------------------
 # Add libraries: need to compile the Dict before linking WCSim !!
@@ -36,14 +39,63 @@ include_directories(${PROJECT_SOURCE_DIR}/include
 
 ## WCSimRootDict.cxx regeneration by rootcint
 ## Use ROOT 5.34.32 as some issues with PARSE_ARGUMENTS were found in older ROOT versions (ROOT 5.34.11)
-ROOT_GENERATE_DICTIONARY(WCSimRootDict ${CMAKE_CURRENT_SOURCE_DIR}/include/WCSimRootEvent.hh ${CMAKE_CURRENT_SOURCE_DIR}/include/WCSimRootGeom.hh ${CMAKE_CURRENT_SOURCE_DIR}/include/WCSimPmtInfo.hh ${CMAKE_CURRENT_SOURCE_DIR}/include/WCSimEnumerations.hh  ${CMAKE_CURRENT_SOURCE_DIR}/include/WCSimRootOptions.hh ${CMAKE_CURRENT_SOURCE_DIR}/include/TJNuBeamFlux.hh ${CMAKE_CURRENT_SOURCE_DIR}/include/TNRooTrackerVtx.hh LINKDEF ${CMAKE_CURRENT_SOURCE_DIR}/include/WCSimRootLinkDef.hh)
+if ( ${ROOT_VERSION} GREATER_EQUAL 6 )
+	# ROOT6 doesn't accept '/' in target and header names, use include_directories instead 
+	# and move the dict source after
+	include_directories(${CMAKE_CURRENT_SOURCE_DIR}/include)
+	ROOT_GENERATE_DICTIONARY(WCSimRootDict 
+			WCSimRootEvent.hh 
+			WCSimRootGeom.hh 
+			WCSimPmtInfo.hh 
+			WCSimEnumerations.hh 
+			WCSimRootOptions.hh 
+			TJNuBeamFlux.hh 
+			TNRooTrackerVtx.hh 
+			WCSimRootTools.hh 
+			LINKDEF ${CMAKE_CURRENT_SOURCE_DIR}/include/WCSimRootLinkDef.hh)
+
+else()
+	# ROOT5 need the full path
+	ROOT_GENERATE_DICTIONARY(WCSimRootDict 
+			${CMAKE_CURRENT_SOURCE_DIR}/include/WCSimRootEvent.hh 
+			${CMAKE_CURRENT_SOURCE_DIR}/include/WCSimRootGeom.hh 
+			${CMAKE_CURRENT_SOURCE_DIR}/include/WCSimPmtInfo.hh 
+			${CMAKE_CURRENT_SOURCE_DIR}/include/WCSimEnumerations.hh 
+			${CMAKE_CURRENT_SOURCE_DIR}/include/WCSimRootOptions.hh 
+			${CMAKE_CURRENT_SOURCE_DIR}/include/TJNuBeamFlux.hh 
+			${CMAKE_CURRENT_SOURCE_DIR}/include/TNRooTrackerVtx.hh 
+			${CMAKE_CURRENT_SOURCE_DIR}/include/WCSimRootTools.hh 
+			LINKDEF ${CMAKE_CURRENT_SOURCE_DIR}/include/WCSimRootLinkDef.hh)
+
+endif()
+
+
 
 
 ## Crucial for reading ROOT classes: make shared object library
-add_library(WCSimRoot SHARED ./src/WCSimRootEvent.cc ./src/WCSimRootGeom.cc ./src/WCSimPmtInfo.cc ./src/WCSimEnumerations.cc ./src/WCSimRootOptions.cc ./src/TJNuBeamFlux.cc ./src/TNRooTrackerVtx.cc WCSimRootDict.cxx)
+add_library(WCSimRoot SHARED 
+		./src/WCSimRootEvent.cc 
+		./src/WCSimRootGeom.cc 
+		./src/WCSimPmtInfo.cc 
+		./src/WCSimEnumerations.cc 
+		./src/WCSimRootOptions.cc 
+		./src/TJNuBeamFlux.cc 
+		./src/TNRooTrackerVtx.cc 
+		./src/WCSimRootTools.cc 
+		WCSimRootDict.cxx)
 target_link_libraries(WCSimRoot  ${ROOT_LIBRARIES})
 
-
+# Create libWCSimRootDict.so (needed for ROOT6)
+add_custom_command(TARGET WCSimRoot
+		POST_BUILD
+		COMMAND ${CMAKE_COMMAND} -E create_symlink libWCSimRoot.so libWCSimRootDict.so)
+
+if ( ${ROOT_VERSION} LESS 6 )
+	# Create Rootmap (not automatically done for ROOT5)
+	add_custom_command(TARGET WCSimRoot
+		POST_BUILD
+		COMMAND rlibmap -o ${CMAKE_CURRENT_BINARY_DIR}/libWCSimRoot.rootmap -l ${CMAKE_CURRENT_BINARY_DIR}/libWCSimRoot.so -c ${CMAKE_CURRENT_SOURCE_DIR}/include/WCSimRootLinkDef.hh)
+endif()
 
 #----------------------------------------------------------------------------
 # Find Geant4 package, activating all available UI and Vis drivers by default
@@ -103,10 +155,18 @@ if (NOT (PROJECT_SOURCE_DIR STREQUAL PROJECT_BINARY_DIR))
   # file(COPY ${PROJECT_SOURCE_DIR}/include DESTINATION ${PROJECT_BINARY_DIR} USE_SOURCE_PERMISSIONS)
   set(WCSIM_FILES
     WCSim.mac
+    biasprofile.dat
+    tuningNominal.mac
+    WCSim_hybrid.mac
+    WCSim_hybrid.sh
+    include/TJNuBeamFlux.hh
+    include/TNRooTrackerVtx.hh
     include/WCSimEnumerations.hh
+    include/WCSimPmtInfo.hh
     include/WCSimRootEvent.hh
     include/WCSimRootGeom.hh
     include/WCSimRootOptions.hh
+    include/WCSimRootTools.hh
     )
   foreach(_file ${WCSIM_FILES})
     configure_file(

GNUmakefile_full

@@ -16,6 +16,7 @@ endif
 ROOTCFLAGS   := $(shell root-config --cflags) -DUSE_ROOT -fPIC
 ROOTLIBS     := $(shell root-config --libs)
 
+#LIBNAME := /home/bquilain/nuPRISM/WCSim/WCSim
 LIBNAME := WCSim
 
 # NOTE: Geant4.7.0 changes the way Maximum Step size is defined.  
@@ -35,7 +36,8 @@ ifdef GCCVERS296
 CPPFLAGS += -DUSE_STRSTREAM
 endif
 
-CPPFLAGS  += -I$(ROOTSYS)/include $(ROOTCFLAGS) -std=c++0x            ##for unordered_map 
+#CPPFLAGS  += -I$(ROOTSYS)/include $(ROOTCFLAGS) -std=c++0x           ##for unordered_map 
+CPPFLAGS  += -I$(ROOTSYS)/include $(ROOTCFLAGS) -std=c++11           ##for unordered_map 
 EXTRALIBS += $(ROOTLIBS)
 
 EXTRA_LINK_DEPENDENCIES := 
@@ -51,15 +53,15 @@ endif
 CPPFLAGS += -DGIT_HASH=\"$(shell git describe --always --long --tags --dirty)\"
 
 .PHONY: all
-all: rootcint shared libWCSim.a lib bin
+all: rootcint movedict shared libWCSim.a lib bin
 
 # Note dependencies not yet set up right yet
 
 ROOTSO    := libWCSimRoot.so
 
-ROOTSRC  := ./src/WCSimRootEvent.cc ./include/WCSimRootEvent.hh ./src/WCSimRootGeom.cc ./include/WCSimRootGeom.hh ./include/WCSimPmtInfo.hh ./src/WCSimEnumerations.cc ./include/WCSimEnumerations.hh ./src/WCSimRootOptions.cc ./include/WCSimRootOptions.hh ./src/TJNuBeamFlux.cc ./include/TJNuBeamFlux.hh ./src/TNRooTrackerVtx.cc ./include/TNRooTrackerVtx.hh ./include/WCSimRootLinkDef.hh
+ROOTSRC  := ./src/WCSimRootEvent.cc ./include/WCSimRootEvent.hh ./src/WCSimRootGeom.cc ./include/WCSimRootGeom.hh ./include/WCSimPmtInfo.hh ./src/WCSimEnumerations.cc ./include/WCSimEnumerations.hh ./src/WCSimRootOptions.cc ./include/WCSimRootOptions.hh ./src/TJNuBeamFlux.cc ./include/TJNuBeamFlux.hh ./src/TNRooTrackerVtx.cc ./include/TNRooTrackerVtx.hh ./src/WCSimRootTools.cc ./include/WCSimRootTools.hh  ./include/WCSimRootLinkDef.hh
 
-ROOTOBJS  := $(G4WORKDIR)/tmp/$(G4SYSTEM)/WCSim/WCSimRootEvent.o $(G4WORKDIR)/tmp/$(G4SYSTEM)/WCSim/WCSimRootGeom.o $(G4WORKDIR)/tmp/$(G4SYSTEM)/WCSim/WCSimPmtInfo.o $(G4WORKDIR)/tmp/$(G4SYSTEM)/WCSim/WCSimEnumerations.o $(G4WORKDIR)/tmp/$(G4SYSTEM)/WCSim/WCSimRootOptions.o $(G4WORKDIR)/tmp/$(G4SYSTEM)/WCSim/TNRooTrackerVtx.o $(G4WORKDIR)/tmp/$(G4SYSTEM)/WCSim/TJNuBeamFlux.o $(G4WORKDIR)/tmp/$(G4SYSTEM)/WCSim/WCSimRootDict.o 
+ROOTOBJS  := $(G4WORKDIR)/tmp/$(G4SYSTEM)/WCSim/WCSimRootEvent.o $(G4WORKDIR)/tmp/$(G4SYSTEM)/WCSim/WCSimRootGeom.o $(G4WORKDIR)/tmp/$(G4SYSTEM)/WCSim/WCSimPmtInfo.o $(G4WORKDIR)/tmp/$(G4SYSTEM)/WCSim/WCSimEnumerations.o $(G4WORKDIR)/tmp/$(G4SYSTEM)/WCSim/WCSimRootOptions.o $(G4WORKDIR)/tmp/$(G4SYSTEM)/WCSim/TNRooTrackerVtx.o $(G4WORKDIR)/tmp/$(G4SYSTEM)/WCSim/TJNuBeamFlux.o $(G4WORKDIR)/tmp/$(G4SYSTEM)/WCSim/WCSimRootTools.o $(G4WORKDIR)/tmp/$(G4SYSTEM)/WCSim/WCSimRootDict.o
 
 shared: $(ROOTSRC) $(ROOTOBJS) 
 	g++ -shared -O $(ROOTOBJS) -o $(ROOTSO) $(ROOTLIBS)
@@ -69,10 +71,13 @@ libWCSim.a : $(ROOTOBJS)
 	ar clq $@ $(ROOTOBJS) 
 
 ./WCSimRootDict.cxx : $(ROOTSRC)
-	rootcint  -f ./WCSimRootDict.cxx -c -I./include -I$(shell root-config --incdir) WCSimRootEvent.hh WCSimRootGeom.hh  WCSimPmtInfo.hh WCSimEnumerations.hh WCSimRootOptions.hh TJNuBeamFlux.hh TNRooTrackerVtx.hh WCSimRootLinkDef.hh
+	rootcint  -f ./WCSimRootDict.cxx -c -I./include -I$(shell root-config --incdir) WCSimRootEvent.hh WCSimRootGeom.hh  WCSimPmtInfo.hh WCSimEnumerations.hh WCSimRootOptions.hh TJNuBeamFlux.hh TNRooTrackerVtx.hh WCSimRootTools.hh WCSimRootLinkDef.hh
 
 rootcint: ./WCSimRootDict.cxx
 
+movedict: rootcint
+	  if [ -f "./WCSimRootDict_rdict.pcm" ]; then cp -f ./WCSimRootDict_rdict.pcm ${G4WORKDIR}/tmp/${G4SYSTEM}/WCSim/; fi
+
 doxy:
 	@if [ ${DOXYGEN_EXISTS} = 1 ]; \
 	then \
@@ -83,14 +88,22 @@ doxy:
 
 clean_wcsim:
 	echo  $(G4WORKDIR); 
-	$(RM) -r $(G4WORKDIR); $(RM) *.o *.a *.so *~ */*~ ./WCSimRootDict.*
+	$(RM) -r $(G4WORKDIR); $(RM) *.o *.a *.so *~ */*~ ./WCSimRootDict*
 	@if [ -d "doc/doxygen" ]; \
 		then \
 		rm -r doc/doxygen; \
 	fi	
 
+#Clean with :: will be executed before the normal G4 clean
+#RootDict may lead to some troubles if not clean before checking dependencies
+clean::
+	@echo "Cleaning RootDict and libWCSim ..."
+	@rm -f ./WCSimRootDict* libWCSim*
+
 include $(G4INSTALL)/config/binmake.gmk
 
+$(G4TMPDIR)/obj.last: $(G4TMPDIR)/WCSimRootDict.o # needed for the "lib" target
+
 $(G4TMPDIR)/%.o: %.cxx
 	@echo Compiling $*.cxx ...
 	@if [ ! -d $(G4TMPDIR) ] ; then echo mkdir -p $(G4TMPDIR) ; mkdir -p $(G4TMPDIR) ; fi

GNUmakefile_root

@@ -24,10 +24,9 @@ G4TMPDIR := $(G4WORKDIR)/tmp/$(G4SYSTEM)/WCSim
 
 ROOTSO    := libWCSimRoot.so
 
-ROOTSRC  := ./src/WCSimRootEvent.cc ./include/WCSimRootEvent.hh ./src/WCSimRootGeom.cc ./include/WCSimRootGeom.hh ./include/WCSimPmtInfo.hh ./src/WCSimEnumerations.cc ./include/WCSimEnumerations.hh ./src/WCSimRootOptions.cc ./include/WCSimRootOptions.hh ./include/WCSimRootLinkDef.hh
-
-ROOTOBJS  := $(G4WORKDIR)/tmp/$(G4SYSTEM)/WCSim/WCSimRootEvent.o $(G4WORKDIR)/tmp/$(G4SYSTEM)/WCSim/WCSimRootGeom.o $(G4WORKDIR)/tmp/$(G4SYSTEM)/WCSim/WCSimPmtInfo.o $(G4WORKDIR)/tmp/$(G4SYSTEM)/WCSim/WCSimEnumerations.o $(G4WORKDIR)/tmp/$(G4SYSTEM)/WCSim/WCSimRootOptions.o $(G4WORKDIR)/tmp/$(G4SYSTEM)/WCSim/WCSim
+ROOTSRC  := ./src/WCSimRootEvent.cc ./include/WCSimRootEvent.hh ./src/WCSimRootGeom.cc ./include/WCSimRootGeom.hh ./include/WCSimPmtInfo.hh ./src/WCSimEnumerations.cc ./include/WCSimEnumerations.hh ./src/WCSimRootOptions.cc ./include/WCSimRootOptions.hh ./src/TJNuBeamFlux.cc ./include/TJNuBeamFlux.hh ./src/TNRooTrackerVtx.cc ./include/TNRooTrackerVtx.hh ./src/WCSimRootTools.cc ./include/WCSimRootTools.hh  ./include/WCSimRootLinkDef.hh
 
+ROOTOBJS  := $(G4WORKDIR)/tmp/$(G4SYSTEM)/WCSim/WCSimRootEvent.o $(G4WORKDIR)/tmp/$(G4SYSTEM)/WCSim/WCSimRootGeom.o $(G4WORKDIR)/tmp/$(G4SYSTEM)/WCSim/WCSimPmtInfo.o $(G4WORKDIR)/tmp/$(G4SYSTEM)/WCSim/WCSimEnumerations.o $(G4WORKDIR)/tmp/$(G4SYSTEM)/WCSim/WCSimRootOptions.o $(G4WORKDIR)/tmp/$(G4SYSTEM)/WCSim/TNRooTrackerVtx.o $(G4WORKDIR)/tmp/$(G4SYSTEM)/WCSim/TJNuBeamFlux.o $(G4WORKDIR)/tmp/$(G4SYSTEM)/WCSim/WCSimRootTools.o $(G4WORKDIR)/tmp/$(G4SYSTEM)/WCSim/WCSimRootDict.o
 
 
 
@@ -48,7 +47,7 @@ libWCSimRoot.so : $(ROOTOBJS)
 
 ./WCSimRootDict.cxx : $(ROOTSRC)
 	@echo Compiling rootcint ...
-	rootcint  -f ./WCSimRootDict.cxx -c -I./include -I$(shell root-config --incdir) WCSimRootEvent.hh WCSimRootGeom.hh  WCSimPmtInfo.hh WCSimEnumerations.hh WCSimRootOptions.hh WCSimRootLinkDef.hh
+	rootcint  -f ./WCSimRootDict.cxx -c -I./include -I$(shell root-config --incdir) WCSimRootEvent.hh WCSimRootGeom.hh  WCSimPmtInfo.hh WCSimEnumerations.hh WCSimRootOptions.hh TJNuBeamFlux.hh TNRooTrackerVtx.hh WCSimRootTools.hh WCSimRootLinkDef.hh
 
 rootcint: ./WCSimRootDict.cxx
 
@@ -66,5 +65,5 @@ $(G4TMPDIR)/%.o: %.cxx
 
 clean :
 	@rm -f $(G4TMPDIR)/*.o
-	@rm -f ./WCSimRootDict.*
+	@rm -f ./WCSimRootDict*
 

README.md

@@ -1,4 +1,4 @@
-## Welcome to WCSim
+# Welcome to WCSim
 
 WCSim is a very flexible GEANT4 based program for developing and
 simulating large water Cherenkov detectors.
@@ -21,14 +21,18 @@ https://lists.phy.duke.edu/mailman/listinfo/wcsim-git
 
 You can follow issues/requests etc by watching the GitHub respository.
 
-## Current notes and how to build
+# Current notes and how to build
 
-Build Instructions:
+## Build Instructions:
+
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+This compilation method is not advised, CMake should be prefered
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 
 You should have a recent and working version of ROOT and GEANT4.
-(Known to work with GEANT 4.10.1p03 and ROOT v5.28.00)  You also need all of the G4
+(Known to work with GEANT 4.10.03p3 and ROOT v5.28.00)  You also need all of the G4
 data files including hadron xsecs etc.  Those are the only
-requirements.  The code should work with gcc 4.4.7. For v1.6.0 and earlier, use GEANT 4.9.4.p01.
+requirements.  The code should work with gcc 4.4.7. For v1.6.0 and earlier, use GEANT 4.10.02+.
 
 To compile: 
 * make clean 
@@ -42,7 +46,7 @@ If you want to use these libraries with an external program then also do:
 More detailed information about the simulation is available in
 doc/DetectorDocumentation.pdf.
 
-Build Instructions using CMake:
+## Build Instructions using CMake:
 
 CMake is cross-platform software for managing the build process in 
 a compiler-independent way (cmake.org). 
@@ -52,18 +56,19 @@ builds through CMake from 4.9.4 onwards (http://geant4.web.cern.ch/geant4/suppor
 Using cmake, builds and source code need to well separated and make
 it easier to build many versions of the same software.
 
+
 A recommended way to set up the directory structure in your own
 preferred WCSIM_HOME:
 - ${WCSIM_HOME}/WCSim : contains the src dir, typically the cloned or 
   unzipped code from GitHub
-- ${WCSIM_HOME}/WCSim_build : contains directories for each build, eg.
+- ${WCSIM_HOME}/WCSim-build : contains directories for each build, eg.
   for each branch you want to test or for different releases, comparing
   debugged versions, etc.
   This directory will contain the executable, the example macros and
   library for ROOT.
 
 To compile you need to have CMakeLists.txt in the WCSim source dir.
-* mkdir ${WCSIM_HOME}/WCSim_build/mydir ; cd ${WCSIM_HOME}/WCSim_build/mydir
+* mkdir ${WCSIM_HOME}/WCSim-build/mydir ; cd ${WCSIM_HOME}/WCSim-build/mydir
 * Set up the Geant4_Dir: export Geant4_DIR=${HOME}/Geant4/install/geant4.9.6.p04 
   (from the make install phase of Geant4)
 * cmake ../../WCSim : this executes the commands in CMakeLists.txt and generates
@@ -82,6 +87,27 @@ Useful cmake commands:
 * make edit_cache : customize the build.
 * make rebuild_cache : redo the cmake phase.
 
+## Build with CMake on sukap:
+
+A script allowing to build WCSim with CMake on sukap is available:
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+./make_sukap.sh
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+
+This script will read the current WCSim directory name and create a directory to hold the different cmake builds. 
+For example, in case your current WCSim directory name is 'WCSim', it will create a '../WCSim-build' directory. 
+It will then create a directory for your current branch which will have the name of the current branch.
+
+For example, in case of this WCSim repository, you will have:
+
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+WCSim
+WCSim-dir
+WCSim-dir/hybridPMT
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+
+Note: the script env_sukap.sh provide PATH toward Geant4 and ROOT directories on sukap. However, the current ROOT directory is pointing to Guillaume Pronost space. The reason is the default ROOT 5.34 available on sukap is not compatible with CMake compilation. This should be modify in the future.
+
 
 
 ## Color Convention for visualization used in WCSimVismanager.cc
@@ -98,3 +124,19 @@ Useful cmake commands:
 ```
 WCSim development is supported by the United States National Science Foundation.
 ```
+
+#######################################
+HYBRID configuration (B.Q)
+#######################################
+Requirements for this version:
+-ROOT v5r34p36 or v5r34p38. Others might work but have not been tested (all v5r34 probably works). ROOT v6 does not work so far.
+-GEANT4 v10r02 or later. Test with v10r03p03.
+-cmake should be installed. The installation needs to be done with cmake since the Rn background generator has been added.
+
+0. The environment variable WCSIMDIR should be defined as your WCSIM directory (not the build one).
+export WCSIMDIR=`pwd`
+1. Please install using cmake as detailed earlier in this README.md.
+2. First running of hybrid configuration: please use WCSim_hybrid.sh
+3. Readout the output: a script exists in sample-root-scripts, named AnalyzeWSHierarchy.c
+a. Compile it using Makefile in sample-root-scripts (make)
+b. Execute it using Analyzer.sh in sample-root-scripts (./Analyzer.sh)

SetupGitHub.sh

@@ -0,0 +1,13 @@
+#!/bin/bash
+
+#Check if connected to https or ssh
+IsHTTPS=$(git remote -v | grep "https" | wc -l)
+
+if [ "${IsHTTPS}"  -gt 0 ] ; then
+	echo "Adding https Upstream to bquilain/WCSim"
+	git remote add upstream https://github.com/bquilain/WCSim
+else
+	echo "Adding ssh Upstream to bquilain/WCSim"
+	git remote add upstream [email protected]:bquilain/WCSim.git
+fi
+