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fedora sockets images for nwchem 7.0.0
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FROM fedora:32 | ||
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MAINTAINER Edoardo Apra <[email protected]> | ||
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RUN dnf install -y python-devel gcc-gfortran openblas openmpi-devel scalapack-openmpi-devel openssh-clients which bzip2 patch make perl findutils hostname git \ | ||
&& dnf clean all \ | ||
&& useradd -c 'NWChem user' -m -d /home/nwchem -s /bin/bash nwchem | ||
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USER nwchem | ||
ENV NWCHEM_TOP="/home/nwchem/nwchem-7.0.0" \ | ||
PATH=$PATH:/home/nwchem/nwchem-7.0.0/bin/LINUX64:/usr/lib64/openmpi/bin/:/home/nwchem/nwchem-7.0.0/QA/:PATH \ | ||
NWCHEM_TARGET=LINUX64 \ | ||
NWCHEM_MODULES="all python" \ | ||
BLASOPT="/usr/lib64/libopenblas.so.0 -lpthread -lrt" \ | ||
LAPACK_LIB="/usr/lib64/libopenblas.so.0 -lpthread -lrt" \ | ||
BLAS_SIZE=4 \ | ||
USE_64TO32=y \ | ||
LD_LIBRARY_PATH="$LD_LIBRARY_PATH:/usr/lib64/openmpi/lib" \ | ||
SCALAPACK="-L/usr/lib64/openmpi/lib -lscalapack " \ | ||
USE_MPI=y \ | ||
USE_MPIF=y \ | ||
USE_MPIF4=y \ | ||
ARMCI_NETWORK=SOCKETS \ | ||
NWCHEM_EXECUTABLE=/home/nwchem/nwchem-7.0.0/bin/LINUX64/nwchem \ | ||
NWCHEM_BASIS_LIBRARY=/home/nwchem/nwchem-7.0.0/src/basis/libraries/ \ | ||
NWCHEM_NWPW_LIBRARY=/home/nwchem/nwchem-7.0.0/src/nwpw/libraryps/ \ | ||
FFIELD=amber \ | ||
AMBER_1=/home/nwchem/nwchem-7.0.0/src/data/amber_s/ \ | ||
AMBER_2=/home/nwchem/nwchem-7.0.0/src/data/amber_q/ \ | ||
AMBER_3=/home/nwchem/nwchem-7.0.0/src/data/amber_x/ \ | ||
AMBER_4=/home/nwchem/nwchem-7.0.0/src/data/amber_u/ \ | ||
SPCE=/home/nwchem/nwchem-7.0.0/src/data/solvents/spce.rst \ | ||
CHARMM_S=/home/nwchem/nwchem-7.0.0/src/data/charmm_s/ \ | ||
CHARMM_X=/home/nwchem/nwchem-7.0.0/src/data/charmm_x/ \ | ||
OMPI_MCA_btl_vader_single_copy_mechanism=none | ||
#ENV ELPA="-I/usr/lib64/gfortran/modules/openmpi -L/usr/lib64/openmpi/lib -lelpa" | ||
RUN cd /home/nwchem; curl -SL https://github.com/nwchemgit/nwchem/releases/download/v7.0.0-release/nwchem-7.0.0-release.revision-2c9a1c7c-src.2020-02-26.tar.bz2 | tar jxf - \ | ||
&& cd nwchem-7.0.0/src \ | ||
&& sed -i 's|-march=native||' config/makefile.h \ | ||
&& sed -i 's|-mtune=native|-mtune=generic|' config/makefile.h \ | ||
&& sed -i 's|-mfpmath=sse||' config/makefile.h \ | ||
&& sed -i 's|-msse3||' config/makefile.h \ | ||
&& ls -lrt \ | ||
&& make nwchem_config \ | ||
&& make -j3 | ||
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#WORKDIR /home/nwchem/nwchem-7.0.0/QA | ||
#ENTRYPOINT ["runtests.mpi.unix","procs","3"] | ||
WORKDIR /data | ||
ENTRYPOINT ["/bin/bash"] | ||
#ENTRYPOINT ["mpirun","-np","3","nwchem"] |
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Based on earlier work by Vladimir Konjkov | ||
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Builds a NWChem 7.0.0 binary using all modules and ARMCI_NETWORK=SOCKETS | ||
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### Build Instructions | ||
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The file Dockerfile can be used by tying the command | ||
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docker build -t nwchem-700.fedora.sockets . | ||
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### Usage | ||
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The following command will run NWChem on 1 processor (will remove the hardwired value later ...) | ||
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docker run --entrypoint='mpirun' -v [host_dir]:/data nwchem-700.fedora.sockets nwchem [input.nw] | ||
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### Examples | ||
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#### Modifiy mpirun options | ||
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The following command will run NWChem on 3 processors | ||
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docker run --entrypoint='mpirun' -v /home/edo/nwchem/tests:/data nwchem-700.fedora.sockets -np 3 nwchem /data/bar_lcwpbe | ||
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Get shell on the Docker container | ||
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docker run -v /home/edo/nwchem/tests:/data -it nwchem-700.fedora.sockets |