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WIP: Create abnormalProportionOfCellTypeInLocation.yaml #694

Merged
merged 6 commits into from
May 7, 2020
45 changes: 45 additions & 0 deletions src/patterns/dosdp-dev/abnormalProportionOfCellTypeInLocation.yaml
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pattern_name: abnormalProportionOfCellTypeInLocation
pattern_iri: http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormalProportionOfCellTypeInLocation.yaml
description: "An abnormal proportion of a cell, in a location, like the blood. For example: HP_0020111 'Abnormal CD4+CD25+ regulatory T cell proportion'."

contributors:
- https://orcid.org/0000-0001-5208-3432

classes:
proportionality to: PATO:0001470
abnormal: PATO:0000460
cell: CL:0000000
independent continuant: BFO:0000004

relations:
inheres_in: RO:0000052
has_modifier: RO:0002573
has_part: BFO:0000051
part_of: BFO:0000050
towards: RO:0002503

annotationProperties:
exact_synonym: oio:hasExactSynonym

vars:
cell: "cell"
location: "'independent continuant'"

name:
text: "abnormal proportion of %s in %s"
vars:
- cell
- location

def:
text: "A deviation from the normal proportion of %s in the %s."
vars:
- cell
- location

equivalentTo:
text: "'has_part' some ('proportionality to' and ('inheres_in' some (%s and ('part_of' some %s))) and ('towards' some 'cell') and ('has_modifier' some 'abnormal'))"
vars:
- cell
- location