Test perf lookup int, rewrite of graphs

oeuvres · Aug 17, 2024 · ff63057 · ff63057
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diff --git a/alix-cli/lib/alix-0.9.1-SNAPSHOT.jar b/alix-cli/lib/alix-0.9.1-SNAPSHOT.jar
diff --git a/docs/allclasses-index.html b/docs/allclasses-index.html
diff --git a/docs/com/github/oeuvres/alix/lucene/search/FieldFacet.html b/docs/com/github/oeuvres/alix/lucene/search/FieldFacet.html
@@ -489,9 +489,8 @@ <h3>formEnum</h3>
  Searching for the word "dummy" may result in a count of occurrences of the word "dummy"
  very different on each facet (withLotsOfDummy: a lot, withSomeDummy: some, withoutDummy: 0).
 
-
  Query maybe restricted by a doc filter (a
- corpus). If there are no search in the search, will cry. Returns an iterator
+ corpus). If there are no terms in the search, will cry. Returns an iterator
  on search of this facet, with scores and other stats.</div>
 <dl class="notes">
 <dt>Parameters:</dt>

diff --git a/docs/com/github/oeuvres/alix/lucene/search/FieldRail.html b/docs/com/github/oeuvres/alix/lucene/search/FieldRail.html
@@ -169,7 +169,7 @@ <h2>Method Summary</h2>
 <div class="table-header col-second">Method</div>
 <div class="table-header col-last">Description</div>
 <div class="col-first even-row-color method-summary-table method-summary-table-tab2 method-summary-table-tab4"><code><a href="FormEnum.html" title="class in com.github.oeuvres.alix.lucene.search">FormEnum</a></code></div>
-<div class="col-second even-row-color method-summary-table method-summary-table-tab2 method-summary-table-tab4"><code><a href="#coocs(org.apache.lucene.util.BytesRef%5B%5D,int,int,org.apache.lucene.util.BitSet)" class="member-name-link">coocs</a><wbr>(org.apache.lucene.util.BytesRef[]&nbsp;pivotBytes,
+<div class="col-second even-row-color method-summary-table method-summary-table-tab2 method-summary-table-tab4"><code><a href="#coocs(int%5B%5D,int,int,org.apache.lucene.util.BitSet)" class="member-name-link">coocs</a><wbr>(int[]&nbsp;pivotIds,
  int&nbsp;left,
  int&nbsp;right,
  org.apache.lucene.util.BitSet&nbsp;docFilter)</code></div>
@@ -345,9 +345,9 @@ <h3>FieldRail</h3>
 <h2>Method Details</h2>
 <ul class="member-list">
 <li>
-<section class="detail" id="coocs(org.apache.lucene.util.BytesRef[],int,int,org.apache.lucene.util.BitSet)">
+<section class="detail" id="coocs(int[],int,int,org.apache.lucene.util.BitSet)">
 <h3>coocs</h3>
-<div class="member-signature"><span class="modifiers">public</span>&nbsp;<span class="return-type"><a href="FormEnum.html" title="class in com.github.oeuvres.alix.lucene.search">FormEnum</a></span>&nbsp;<span class="element-name">coocs</span><wbr><span class="parameters">(org.apache.lucene.util.BytesRef[]&nbsp;pivotBytes,
+<div class="member-signature"><span class="modifiers">public</span>&nbsp;<span class="return-type"><a href="FormEnum.html" title="class in com.github.oeuvres.alix.lucene.search">FormEnum</a></span>&nbsp;<span class="element-name">coocs</span><wbr><span class="parameters">(int[]&nbsp;pivotIds,
  int&nbsp;left,
  int&nbsp;right,
  org.apache.lucene.util.BitSet&nbsp;docFilter)</span>
@@ -357,7 +357,7 @@ <h3>coocs</h3>
  params, set on the FormEnum object.</div>
 <dl class="notes">
 <dt>Parameters:</dt>
-<dd><code>pivotBytes</code> - an ordered set of lucene terms.</dd>
+<dd><code>pivotIds</code> - an set of lucene terms.</dd>
 <dd><code>left</code> - width of context before a pivot.</dd>
 <dd><code>right</code> - width of context after a pivot.</dd>
 <dd><code>docFilter</code> - optional, set of lucene internal docId to restrict collect.</dd>
@@ -379,7 +379,7 @@ <h3>edges</h3>
                  throws <span class="exceptions"><a href="https://docs.oracle.com/en/java/javase/11/docs/api/java.base/java/io/IOException.html" title="class or interface in java.io" class="external-link">IOException</a></span></div>
 <div class="block">Loop on a set of pivots, explore their context,
  record edges between a set of cooccurents in these contexts.
- The set coocIds should have been obtained by <a href="#coocs(org.apache.lucene.util.BytesRef%5B%5D,int,int,org.apache.lucene.util.BitSet)"><code>coocs(BytesRef[], int, int, BitSet)</code></a>.</div>
+ The set coocIds should have been obtained by <a href="#coocs(int%5B%5D,int,int,org.apache.lucene.util.BitSet)"><code>coocs(int[], int, int, BitSet)</code></a>.</div>
 <dl class="notes">
 <dt>Parameters:</dt>
 <dd><code>pivotIds</code> - set of formId from a <a href="FieldText.html" title="class in com.github.oeuvres.alix.lucene.search"><code>FieldText</code></a>, word pivots to search around.</dd>
@@ -472,7 +472,7 @@ <h3>positions</h3>
  <code>FieldCharsAbstract.bytesSorted(CharSequence[])</code>
  or <code>FieldCharsAbstract.bytesSorted(int[])</code>,
  get an ordered list of positions by docId.
- Used by <a href="#coocs(org.apache.lucene.util.BytesRef%5B%5D,int,int,org.apache.lucene.util.BitSet)"><code>coocs(BytesRef[], int, int, BitSet)</code></a>.</div>
+ Used by <a href="#coocs(int%5B%5D,int,int,org.apache.lucene.util.BitSet)"><code>coocs(int[], int, int, BitSet)</code></a>.</div>
 <dl class="notes">
 <dt>Parameters:</dt>
 <dd><code>pivotBytes</code> - mandatory, ordered set of terms of this field, as bytes.</dd>

diff --git a/docs/com/github/oeuvres/alix/lucene/search/FormEnum.html b/docs/com/github/oeuvres/alix/lucene/search/FormEnum.html
@@ -392,7 +392,7 @@ <h2>Method Summary</h2>
  int[]&nbsp;pivotIds)</code></div>
 <div class="col-last odd-row-color method-summary-table method-summary-table-tab2 method-summary-table-tab4">
 <div class="block">Scores a <a href="FormEnum.html" title="class in com.github.oeuvres.alix.lucene.search"><code>FormEnum</code></a> with freqs extracted from co-occurrences extraction
- in a <a href="FieldRail.html#coocs(org.apache.lucene.util.BytesRef%5B%5D,int,int,org.apache.lucene.util.BitSet)"><code>FieldRail.coocs(BytesRef[], int, int, BitSet)</code></a>.</div>
+ in a <a href="FieldRail.html#coocs(int%5B%5D,int,int,org.apache.lucene.util.BitSet)"><code>FieldRail.coocs(int[], int, int, BitSet)</code></a>.</div>
 </div>
 <div class="col-first even-row-color method-summary-table method-summary-table-tab2 method-summary-table-tab4"><code>double</code></div>
 <div class="col-second even-row-color method-summary-table method-summary-table-tab2 method-summary-table-tab4"><code><a href="#scoreByRank(int)" class="member-name-link">scoreByRank</a><wbr>(int&nbsp;rank)</code></div>
@@ -997,7 +997,7 @@ <h3>score</h3>
  int[]&nbsp;pivotIds)</span>
                throws <span class="exceptions"><a href="https://docs.oracle.com/en/java/javase/11/docs/api/java.base/java/io/IOException.html" title="class or interface in java.io" class="external-link">IOException</a></span></div>
 <div class="block">Scores a <a href="FormEnum.html" title="class in com.github.oeuvres.alix.lucene.search"><code>FormEnum</code></a> with freqs extracted from co-occurrences extraction
- in a <a href="FieldRail.html#coocs(org.apache.lucene.util.BytesRef%5B%5D,int,int,org.apache.lucene.util.BitSet)"><code>FieldRail.coocs(BytesRef[], int, int, BitSet)</code></a>. Scoring uses a “mutual information”
+ in a <a href="FieldRail.html#coocs(int%5B%5D,int,int,org.apache.lucene.util.BitSet)"><code>FieldRail.coocs(int[], int, int, BitSet)</code></a>. Scoring uses a “mutual information”
  <a href="../../util/MI.html" title="enum in com.github.oeuvres.alix.util"><code>MI</code></a> formula (probability like, not tf-idf like). Parameters
  are
 

diff --git a/docs/com/github/oeuvres/alix/lucene/search/class-use/FormEnum.html b/docs/com/github/oeuvres/alix/lucene/search/class-use/FormEnum.html
@@ -71,7 +71,7 @@ <h2>Uses of <a href="../FormEnum.html" title="class in com.github.oeuvres.alix.l
 <div class="table-header col-second">Method</div>
 <div class="table-header col-last">Description</div>
 <div class="col-first even-row-color"><code><a href="../FormEnum.html" title="class in com.github.oeuvres.alix.lucene.search">FormEnum</a></code></div>
-<div class="col-second even-row-color"><span class="type-name-label">FieldRail.</span><code><a href="../FieldRail.html#coocs(org.apache.lucene.util.BytesRef%5B%5D,int,int,org.apache.lucene.util.BitSet)" class="member-name-link">coocs</a><wbr>(org.apache.lucene.util.BytesRef[]&nbsp;pivotBytes,
+<div class="col-second even-row-color"><span class="type-name-label">FieldRail.</span><code><a href="../FieldRail.html#coocs(int%5B%5D,int,int,org.apache.lucene.util.BitSet)" class="member-name-link">coocs</a><wbr>(int[]&nbsp;pivotIds,
  int&nbsp;left,
  int&nbsp;right,
  org.apache.lucene.util.BitSet&nbsp;docFilter)</code></div>
@@ -149,7 +149,7 @@ <h2>Uses of <a href="../FormEnum.html" title="class in com.github.oeuvres.alix.l
  int[]&nbsp;pivotIds)</code></div>
 <div class="col-last even-row-color">
 <div class="block">Scores a <a href="../FormEnum.html" title="class in com.github.oeuvres.alix.lucene.search"><code>FormEnum</code></a> with freqs extracted from co-occurrences extraction
- in a <a href="../FieldRail.html#coocs(org.apache.lucene.util.BytesRef%5B%5D,int,int,org.apache.lucene.util.BitSet)"><code>FieldRail.coocs(BytesRef[], int, int, BitSet)</code></a>.</div>
+ in a <a href="../FieldRail.html#coocs(int%5B%5D,int,int,org.apache.lucene.util.BitSet)"><code>FieldRail.coocs(int[], int, int, BitSet)</code></a>.</div>
 </div>
 <div class="col-first odd-row-color"><code><a href="../FormEnum.html" title="class in com.github.oeuvres.alix.lucene.search">FormEnum</a></code></div>
 <div class="col-second odd-row-color"><span class="type-name-label">FormEnum.</span><code><a href="../FormEnum.html#sort(com.github.oeuvres.alix.lucene.search.FormIterator.Order)" class="member-name-link">sort</a><wbr>(<a href="../FormIterator.Order.html" title="enum in com.github.oeuvres.alix.lucene.search">FormIterator.Order</a>&nbsp;order)</code></div>

diff --git a/docs/com/github/oeuvres/alix/util/EdgeMatrix.EdgeIt.html b/docs/com/github/oeuvres/alix/util/EdgeMatrix.EdgeIt.html
@@ -87,7 +87,7 @@ <h1 title="Class EdgeMatrix.EdgeIt" class="title">Class EdgeMatrix.EdgeIt</h1>
 <div class="type-signature"><span class="modifiers">public class </span><span class="element-name type-name-label">EdgeMatrix.EdgeIt</span>
 <span class="extends-implements">extends <a href="https://docs.oracle.com/en/java/javase/11/docs/api/java.base/java/lang/Object.html" title="class or interface in java.lang" class="external-link">Object</a>
 implements <a href="https://docs.oracle.com/en/java/javase/11/docs/api/java.base/java/util/Iterator.html" title="class or interface in java.util" class="external-link">Iterator</a>&lt;<a href="Edge.html" title="class in com.github.oeuvres.alix.util">Edge</a>&gt;</span></div>
-<div class="block">An iterator of edges.</div>
+<div class="block">A complex iterator on edges, trying to avoid orphans.</div>
 </section>
 <section class="summary">
 <ul class="summary-list">
@@ -113,12 +113,9 @@ <h2>Method Summary</h2>
 <div class="col-first even-row-color method-summary-table method-summary-table-tab2 method-summary-table-tab4"><code><a href="Edge.html" title="class in com.github.oeuvres.alix.util">Edge</a></code></div>
 <div class="col-second even-row-color method-summary-table method-summary-table-tab2 method-summary-table-tab4"><code><a href="#next()" class="member-name-link">next</a>()</code></div>
 <div class="col-last even-row-color method-summary-table method-summary-table-tab2 method-summary-table-tab4">&nbsp;</div>
-<div class="col-first odd-row-color method-summary-table method-summary-table-tab2 method-summary-table-tab4"><code>void</code></div>
-<div class="col-second odd-row-color method-summary-table method-summary-table-tab2 method-summary-table-tab4"><code><a href="#remove()" class="member-name-link">remove</a>()</code></div>
-<div class="col-last odd-row-color method-summary-table method-summary-table-tab2 method-summary-table-tab4">&nbsp;</div>
-<div class="col-first even-row-color method-summary-table method-summary-table-tab2 method-summary-table-tab4"><code><a href="Edge.html" title="class in com.github.oeuvres.alix.util">Edge</a></code></div>
-<div class="col-second even-row-color method-summary-table method-summary-table-tab2 method-summary-table-tab4"><code><a href="#top(int)" class="member-name-link">top</a><wbr>(int&nbsp;nodeId)</code></div>
-<div class="col-last even-row-color method-summary-table method-summary-table-tab2 method-summary-table-tab4">
+<div class="col-first odd-row-color method-summary-table method-summary-table-tab2 method-summary-table-tab4"><code><a href="Edge.html" title="class in com.github.oeuvres.alix.util">Edge</a></code></div>
+<div class="col-second odd-row-color method-summary-table method-summary-table-tab2 method-summary-table-tab4"><code><a href="#top(int)" class="member-name-link">top</a><wbr>(int&nbsp;nodeId)</code></div>
+<div class="col-last odd-row-color method-summary-table method-summary-table-tab2 method-summary-table-tab4">
 <div class="block">Check if a node has relations</div>
 </div>
 </div>
@@ -129,7 +126,7 @@ <h3 id="methods-inherited-from-class-java.lang.Object">Methods inherited from cl
 <code><a href="https://docs.oracle.com/en/java/javase/11/docs/api/java.base/java/lang/Object.html#clone()" title="class or interface in java.lang" class="external-link">clone</a>, <a href="https://docs.oracle.com/en/java/javase/11/docs/api/java.base/java/lang/Object.html#equals(java.lang.Object)" title="class or interface in java.lang" class="external-link">equals</a>, <a href="https://docs.oracle.com/en/java/javase/11/docs/api/java.base/java/lang/Object.html#finalize()" title="class or interface in java.lang" class="external-link">finalize</a>, <a href="https://docs.oracle.com/en/java/javase/11/docs/api/java.base/java/lang/Object.html#getClass()" title="class or interface in java.lang" class="external-link">getClass</a>, <a href="https://docs.oracle.com/en/java/javase/11/docs/api/java.base/java/lang/Object.html#hashCode()" title="class or interface in java.lang" class="external-link">hashCode</a>, <a href="https://docs.oracle.com/en/java/javase/11/docs/api/java.base/java/lang/Object.html#notify()" title="class or interface in java.lang" class="external-link">notify</a>, <a href="https://docs.oracle.com/en/java/javase/11/docs/api/java.base/java/lang/Object.html#notifyAll()" title="class or interface in java.lang" class="external-link">notifyAll</a>, <a href="https://docs.oracle.com/en/java/javase/11/docs/api/java.base/java/lang/Object.html#toString()" title="class or interface in java.lang" class="external-link">toString</a>, <a href="https://docs.oracle.com/en/java/javase/11/docs/api/java.base/java/lang/Object.html#wait()" title="class or interface in java.lang" class="external-link">wait</a>, <a href="https://docs.oracle.com/en/java/javase/11/docs/api/java.base/java/lang/Object.html#wait(long)" title="class or interface in java.lang" class="external-link">wait</a>, <a href="https://docs.oracle.com/en/java/javase/11/docs/api/java.base/java/lang/Object.html#wait(long,int)" title="class or interface in java.lang" class="external-link">wait</a></code></div>
 <div class="inherited-list">
 <h3 id="methods-inherited-from-class-java.util.Iterator">Methods inherited from interface&nbsp;java.util.<a href="https://docs.oracle.com/en/java/javase/11/docs/api/java.base/java/util/Iterator.html" title="class or interface in java.util" class="external-link">Iterator</a></h3>
-<code><a href="https://docs.oracle.com/en/java/javase/11/docs/api/java.base/java/util/Iterator.html#forEachRemaining(java.util.function.Consumer)" title="class or interface in java.util" class="external-link">forEachRemaining</a></code></div>
+<code><a href="https://docs.oracle.com/en/java/javase/11/docs/api/java.base/java/util/Iterator.html#forEachRemaining(java.util.function.Consumer)" title="class or interface in java.util" class="external-link">forEachRemaining</a>, <a href="https://docs.oracle.com/en/java/javase/11/docs/api/java.base/java/util/Iterator.html#remove()" title="class or interface in java.util" class="external-link">remove</a></code></div>
 </section>
 </li>
 </ul>
@@ -185,16 +182,6 @@ <h3>getNext</h3>
 </dl>
 </section>
 </li>
-<li>
-<section class="detail" id="remove()">
-<h3>remove</h3>
-<div class="member-signature"><span class="modifiers">public</span>&nbsp;<span class="return-type">void</span>&nbsp;<span class="element-name">remove</span>()</div>
-<dl class="notes">
-<dt>Specified by:</dt>
-<dd><code><a href="https://docs.oracle.com/en/java/javase/11/docs/api/java.base/java/util/Iterator.html#remove()" title="class or interface in java.util" class="external-link">remove</a></code>&nbsp;in interface&nbsp;<code><a href="https://docs.oracle.com/en/java/javase/11/docs/api/java.base/java/util/Iterator.html" title="class or interface in java.util" class="external-link">Iterator</a>&lt;<a href="Edge.html" title="class in com.github.oeuvres.alix.util">Edge</a>&gt;</code></dd>
-</dl>
-</section>
-</li>
 </ul>
 </section>
 </li>