Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Add support for configurable containers engines #963

Merged
merged 147 commits into from
Oct 3, 2024

Commits on May 6, 2024

  1. Configuration menu
    Copy the full SHA
    7147bfe View commit details
    Browse the repository at this point in the history

Commits on May 7, 2024

  1. Update Exacloud support

    lbeckman314 committed May 7, 2024
    Configuration menu
    Copy the full SHA
    af00d03 View commit details
    Browse the repository at this point in the history
  2. Clean up console debug output

    [no ci]
    lbeckman314 committed May 7, 2024
    Configuration menu
    Copy the full SHA
    fc3d277 View commit details
    Browse the repository at this point in the history

Commits on May 8, 2024

  1. Add default Worker engine ('docker')

    [no ci]
    lbeckman314 committed May 8, 2024
    Configuration menu
    Copy the full SHA
    9dbef33 View commit details
    Browse the repository at this point in the history

Commits on May 9, 2024

  1. Configuration menu
    Copy the full SHA
    a3a3445 View commit details
    Browse the repository at this point in the history

Commits on May 10, 2024

  1. Configuration menu
    Copy the full SHA
    8ec817b View commit details
    Browse the repository at this point in the history

Commits on May 15, 2024

  1. Configuration menu
    Copy the full SHA
    afc5825 View commit details
    Browse the repository at this point in the history

Commits on May 16, 2024

  1. Update ContainerEngine interface

    [no ci]
    lbeckman314 committed May 16, 2024
    Configuration menu
    Copy the full SHA
    28905c0 View commit details
    Browse the repository at this point in the history
  2. Configuration menu
    Copy the full SHA
    703cf44 View commit details
    Browse the repository at this point in the history

Commits on May 17, 2024

  1. Add initial Exadocker unit test

    [no ci]
    lbeckman314 committed May 17, 2024
    Configuration menu
    Copy the full SHA
    83d6e1c View commit details
    Browse the repository at this point in the history
  2. Configuration menu
    Copy the full SHA
    39584ad View commit details
    Browse the repository at this point in the history
  3. Add small fix in HPC Template config

    [no ci]
    lbeckman314 committed May 17, 2024
    Configuration menu
    Copy the full SHA
    1d93375 View commit details
    Browse the repository at this point in the history
  4. Update worker config path in HPC Template

    [no ci]
    lbeckman314 committed May 17, 2024
    Configuration menu
    Copy the full SHA
    1c4221d View commit details
    Browse the repository at this point in the history

Commits on May 20, 2024

  1. Configuration menu
    Copy the full SHA
    53bb0cb View commit details
    Browse the repository at this point in the history

Commits on May 24, 2024

  1. Update input/output working example (md5sum)

    - Test command:
    ```sh
    funnel task create examples/md5sum.json
    ```
    
    [no ci]
    lbeckman314 committed May 24, 2024
    Configuration menu
    Copy the full SHA
    a422b82 View commit details
    Browse the repository at this point in the history

Commits on May 30, 2024

  1. Update docker.go to implement ContainerEngine interface

    - Can be used in HPC environment with unique docker setups (e.g. exadocker) as well as future command templating efforts.
    
    [no ci]
    lbeckman314 committed May 30, 2024
    Configuration menu
    Copy the full SHA
    021eeef View commit details
    Browse the repository at this point in the history
  2. Configuration menu
    Copy the full SHA
    8e2474c View commit details
    Browse the repository at this point in the history
  3. Configuration menu
    Copy the full SHA
    f5acbab View commit details
    Browse the repository at this point in the history

Commits on May 31, 2024

  1. Update docker and kin-openapi to compatible versions

    - github.com/docker/docker versions above v24.0.9 resulted in `panic: Can't connect docker client`:
    
    ```
    ➜ go test tests/auth/auth_test.go
    --- FAIL: TestBasicAuthFail (0.01s)
    panic: Can't connect docker client [recovered]
            panic: Can't connect docker client
    
    FAIL    command-line-arguments  0.673s
    FAIL
    ```
    
    - This error appears to be originating from [util/dockerutil/docker.go](https://github.com/ohsu-comp-bio/funnel/blob/f5acbabe85d28f45f2f86db959c4d7bc929334a4/util/dockerutil/docker.go#L28).
    
    - github.com/getkin/kin-openapi versions above v0.112.0 resulted in type errors:
    
    v0.113.0:
    ```
    ➜ go test util/openapi2proto/main.go
    
    util/openapi2proto/main.go:54:38: invalid operation: p.Value.AdditionalProperties != nil (mismatched types openapi3.AdditionalProperties and untyped nil)
    util/openapi2proto/main.go:55:24: cannot use p.Value.AdditionalProperties (variable of type openapi3.AdditionalProperties) as *openapi3.SchemaRef value in argument to getType
    FAIL    command-line-arguments [build failed]
    FAIL
    ```
    
    v0.123.0 (latest):
    ```
    ➜ go test util/openapi2proto/main.go
    
    util/openapi2proto/main.go:43:7: cannot convert "integer" (untyped string constant) to type *openapi3.Types
    util/openapi2proto/main.go:45:7: cannot convert "boolean" (untyped string constant) to type *openapi3.Types
    util/openapi2proto/main.go:47:7: cannot convert "number" (untyped string constant) to type *openapi3.Types
    util/openapi2proto/main.go:49:7: cannot convert "object" (untyped string constant) to type *openapi3.Types
    util/openapi2proto/main.go:54:38: invalid operation: p.Value.AdditionalProperties != nil (mismatched types openapi3.AdditionalProperties and untyped nil)
    util/openapi2proto/main.go:55:24: cannot use p.Value.AdditionalProperties (variable of type openapi3.AdditionalProperties) as *openapi3.SchemaRef value in argument to getType
    util/openapi2proto/main.go:60:7: cannot convert "array" (untyped string constant) to type *openapi3.Types
    util/openapi2proto/main.go:72:17: cannot use p.Value.Type (variable of type *openapi3.Types) as string value in return statement
    util/openapi2proto/main.go:84:32: invalid operation: param.Schema.Value.Type != "" (mismatched types *openapi3.Types and untyped string)
    util/openapi2proto/main.go:175:17: resp.Get undefined (type *openapi3.Responses has no field or method Get)
    util/openapi2proto/main.go:175:17: too many errors
    FAIL    command-line-arguments [build failed]
    FAIL
    ```
    lbeckman314 committed May 31, 2024
    Configuration menu
    Copy the full SHA
    5450366 View commit details
    Browse the repository at this point in the history
  2. Configuration menu
    Copy the full SHA
    2269fd1 View commit details
    Browse the repository at this point in the history
  3. Configuration menu
    Copy the full SHA
    8648580 View commit details
    Browse the repository at this point in the history
  4. Configuration menu
    Copy the full SHA
    75647ce View commit details
    Browse the repository at this point in the history
  5. Configuration menu
    Copy the full SHA
    997d3c2 View commit details
    Browse the repository at this point in the history
  6. Configuration menu
    Copy the full SHA
    56e74c2 View commit details
    Browse the repository at this point in the history

Commits on Jun 1, 2024

  1. Fix minor linting errors

    lbeckman314 committed Jun 1, 2024
    Configuration menu
    Copy the full SHA
    a9411bb View commit details
    Browse the repository at this point in the history
  2. Configuration menu
    Copy the full SHA
    ee25bd5 View commit details
    Browse the repository at this point in the history
  3. Configuration menu
    Copy the full SHA
    449e144 View commit details
    Browse the repository at this point in the history
  4. Configuration menu
    Copy the full SHA
    f5df70f View commit details
    Browse the repository at this point in the history

Commits on Jun 18, 2024

  1. Configuration menu
    Copy the full SHA
    6374d2f View commit details
    Browse the repository at this point in the history
  2. Configuration menu
    Copy the full SHA
    f27f302 View commit details
    Browse the repository at this point in the history

Commits on Jun 20, 2024

  1. Configuration menu
    Copy the full SHA
    0f36f11 View commit details
    Browse the repository at this point in the history
  2. Update Nextflow tests

    lbeckman314 committed Jun 20, 2024
    Configuration menu
    Copy the full SHA
    c0cc2a8 View commit details
    Browse the repository at this point in the history
  3. Configuration menu
    Copy the full SHA
    69bddbe View commit details
    Browse the repository at this point in the history
  4. Configuration menu
    Copy the full SHA
    2af9c4d View commit details
    Browse the repository at this point in the history
  5. Configuration menu
    Copy the full SHA
    0f14338 View commit details
    Browse the repository at this point in the history
  6. Update Base64Encode test to match Github Actions test

    - TODO: investigate why this is necessary...
    lbeckman314 committed Jun 20, 2024
    Configuration menu
    Copy the full SHA
    85ce5de View commit details
    Browse the repository at this point in the history
  7. Configuration menu
    Copy the full SHA
    56ec776 View commit details
    Browse the repository at this point in the history

Commits on Jun 21, 2024

  1. Revert glob output change based on TesOutput spec

    - Wildcards in outputs will be uploaded to a directory, with no special handling for the filename.
    
    ```yaml
    tesOutput:
      properties:
        url:
         description: |-
            URL at which the TES server makes the output accessible after the task is complete. When tesOutput.path contains wildcards, it must be a directory; see `tesOutput.path_prefix` for details on how output URLs are constructed in this case.
    ```
    lbeckman314 committed Jun 21, 2024
    Configuration menu
    Copy the full SHA
    4bbec3f View commit details
    Browse the repository at this point in the history
  2. Configuration menu
    Copy the full SHA
    ece1266 View commit details
    Browse the repository at this point in the history
  3. Configuration menu
    Copy the full SHA
    c81d0a7 View commit details
    Browse the repository at this point in the history

Commits on Jul 23, 2024

  1. Configuration menu
    Copy the full SHA
    f7905e5 View commit details
    Browse the repository at this point in the history
  2. Configuration menu
    Copy the full SHA
    edc1600 View commit details
    Browse the repository at this point in the history

Commits on Jul 24, 2024

  1. Configuration menu
    Copy the full SHA
    9caa800 View commit details
    Browse the repository at this point in the history
  2. Configuration menu
    Copy the full SHA
    615b46a View commit details
    Browse the repository at this point in the history
  3. Run go mod tidy

    lbeckman314 committed Jul 24, 2024
    Configuration menu
    Copy the full SHA
    b3e6066 View commit details
    Browse the repository at this point in the history
  4. Update Github Actions

    lbeckman314 committed Jul 24, 2024
    Configuration menu
    Copy the full SHA
    20c5238 View commit details
    Browse the repository at this point in the history

Commits on Jul 25, 2024

  1. Configuration menu
    Copy the full SHA
    80bf9a7 View commit details
    Browse the repository at this point in the history

Commits on Jul 26, 2024

  1. Configuration menu
    Copy the full SHA
    0660edc View commit details
    Browse the repository at this point in the history
  2. Update test suite

    lbeckman314 committed Jul 26, 2024
    Configuration menu
    Copy the full SHA
    9e71330 View commit details
    Browse the repository at this point in the history
  3. Nextflow test debug

    lbeckman314 committed Jul 26, 2024
    Configuration menu
    Copy the full SHA
    bd1e79b View commit details
    Browse the repository at this point in the history
  4. Nextflow test debug

    lbeckman314 committed Jul 26, 2024
    Configuration menu
    Copy the full SHA
    59fce8b View commit details
    Browse the repository at this point in the history
  5. Nextflow test debug

    lbeckman314 committed Jul 26, 2024
    Configuration menu
    Copy the full SHA
    d0f6824 View commit details
    Browse the repository at this point in the history
  6. Nextflow test debug

    lbeckman314 committed Jul 26, 2024
    Configuration menu
    Copy the full SHA
    90b69f4 View commit details
    Browse the repository at this point in the history
  7. Configuration menu
    Copy the full SHA
    d9fb95f View commit details
    Browse the repository at this point in the history
  8. Update S3 tests

    lbeckman314 committed Jul 26, 2024
    Configuration menu
    Copy the full SHA
    60de248 View commit details
    Browse the repository at this point in the history
  9. Update S3 tests

    lbeckman314 committed Jul 26, 2024
    Configuration menu
    Copy the full SHA
    582b834 View commit details
    Browse the repository at this point in the history
  10. Configuration menu
    Copy the full SHA
    f405231 View commit details
    Browse the repository at this point in the history
  11. Configuration menu
    Copy the full SHA
    d891fc3 View commit details
    Browse the repository at this point in the history

Commits on Jul 27, 2024

  1. Configuration menu
    Copy the full SHA
    0bdd604 View commit details
    Browse the repository at this point in the history
  2. Configuration menu
    Copy the full SHA
    eac39ef View commit details
    Browse the repository at this point in the history

Commits on Jul 31, 2024

  1. Configuration menu
    Copy the full SHA
    d7272d4 View commit details
    Browse the repository at this point in the history

Commits on Sep 10, 2024

  1. Update K8s support and documentation

    - Update docker images to use quay.io/ohsu-comp-bio/funnel
    lbeckman314 committed Sep 10, 2024
    Configuration menu
    Copy the full SHA
    87fbe0b View commit details
    Browse the repository at this point in the history
  2. Update README.md

    lbeckman314 authored Sep 10, 2024
    Configuration menu
    Copy the full SHA
    976aee0 View commit details
    Browse the repository at this point in the history

Commits on Sep 17, 2024

  1. Configuration menu
    Copy the full SHA
    f5ed646 View commit details
    Browse the repository at this point in the history
  2. Configuration menu
    Copy the full SHA
    42fe597 View commit details
    Browse the repository at this point in the history

Commits on Sep 18, 2024

  1. Configuration menu
    Copy the full SHA
    a570bf3 View commit details
    Browse the repository at this point in the history
  2. Configuration menu
    Copy the full SHA
    119b554 View commit details
    Browse the repository at this point in the history

Commits on Sep 19, 2024

  1. Configuration menu
    Copy the full SHA
    f8db3a5 View commit details
    Browse the repository at this point in the history

Commits on Sep 25, 2024

  1. Configuration menu
    Copy the full SHA
    6705410 View commit details
    Browse the repository at this point in the history
  2. Update Exacloud support

    lbeckman314 committed Sep 25, 2024
    Configuration menu
    Copy the full SHA
    59d806b View commit details
    Browse the repository at this point in the history
  3. Clean up console debug output

    [no ci]
    lbeckman314 committed Sep 25, 2024
    Configuration menu
    Copy the full SHA
    780e7ca View commit details
    Browse the repository at this point in the history
  4. Add default Worker engine ('docker')

    [no ci]
    lbeckman314 committed Sep 25, 2024
    Configuration menu
    Copy the full SHA
    cff593d View commit details
    Browse the repository at this point in the history
  5. Configuration menu
    Copy the full SHA
    2759b97 View commit details
    Browse the repository at this point in the history
  6. Configuration menu
    Copy the full SHA
    ea70dfb View commit details
    Browse the repository at this point in the history
  7. Configuration menu
    Copy the full SHA
    71b1374 View commit details
    Browse the repository at this point in the history
  8. Update ContainerEngine interface

    [no ci]
    lbeckman314 committed Sep 25, 2024
    Configuration menu
    Copy the full SHA
    a233488 View commit details
    Browse the repository at this point in the history
  9. Configuration menu
    Copy the full SHA
    4745850 View commit details
    Browse the repository at this point in the history
  10. Add initial Exadocker unit test

    [no ci]
    lbeckman314 committed Sep 25, 2024
    Configuration menu
    Copy the full SHA
    2082c42 View commit details
    Browse the repository at this point in the history
  11. Configuration menu
    Copy the full SHA
    bbea59a View commit details
    Browse the repository at this point in the history
  12. Add small fix in HPC Template config

    [no ci]
    lbeckman314 committed Sep 25, 2024
    Configuration menu
    Copy the full SHA
    6de2a83 View commit details
    Browse the repository at this point in the history
  13. Update worker config path in HPC Template

    [no ci]
    lbeckman314 committed Sep 25, 2024
    Configuration menu
    Copy the full SHA
    6f008c5 View commit details
    Browse the repository at this point in the history
  14. Configuration menu
    Copy the full SHA
    2f9e8d1 View commit details
    Browse the repository at this point in the history
  15. Update input/output working example (md5sum)

    - Test command:
    ```sh
    funnel task create examples/md5sum.json
    ```
    
    [no ci]
    lbeckman314 committed Sep 25, 2024
    Configuration menu
    Copy the full SHA
    989a9bf View commit details
    Browse the repository at this point in the history
  16. Update docker.go to implement ContainerEngine interface

    - Can be used in HPC environment with unique docker setups (e.g. exadocker) as well as future command templating efforts.
    
    [no ci]
    lbeckman314 committed Sep 25, 2024
    Configuration menu
    Copy the full SHA
    7337d78 View commit details
    Browse the repository at this point in the history
  17. Configuration menu
    Copy the full SHA
    a19a2c4 View commit details
    Browse the repository at this point in the history
  18. Configuration menu
    Copy the full SHA
    93b637a View commit details
    Browse the repository at this point in the history
  19. Update docker and kin-openapi to compatible versions

    - github.com/docker/docker versions above v24.0.9 resulted in `panic: Can't connect docker client`:
    
    ```
    ➜ go test tests/auth/auth_test.go
    --- FAIL: TestBasicAuthFail (0.01s)
    panic: Can't connect docker client [recovered]
            panic: Can't connect docker client
    
    FAIL    command-line-arguments  0.673s
    FAIL
    ```
    
    - This error appears to be originating from [util/dockerutil/docker.go](https://github.com/ohsu-comp-bio/funnel/blob/f5acbabe85d28f45f2f86db959c4d7bc929334a4/util/dockerutil/docker.go#L28).
    
    - github.com/getkin/kin-openapi versions above v0.112.0 resulted in type errors:
    
    v0.113.0:
    ```
    ➜ go test util/openapi2proto/main.go
    
    util/openapi2proto/main.go:54:38: invalid operation: p.Value.AdditionalProperties != nil (mismatched types openapi3.AdditionalProperties and untyped nil)
    util/openapi2proto/main.go:55:24: cannot use p.Value.AdditionalProperties (variable of type openapi3.AdditionalProperties) as *openapi3.SchemaRef value in argument to getType
    FAIL    command-line-arguments [build failed]
    FAIL
    ```
    
    v0.123.0 (latest):
    ```
    ➜ go test util/openapi2proto/main.go
    
    util/openapi2proto/main.go:43:7: cannot convert "integer" (untyped string constant) to type *openapi3.Types
    util/openapi2proto/main.go:45:7: cannot convert "boolean" (untyped string constant) to type *openapi3.Types
    util/openapi2proto/main.go:47:7: cannot convert "number" (untyped string constant) to type *openapi3.Types
    util/openapi2proto/main.go:49:7: cannot convert "object" (untyped string constant) to type *openapi3.Types
    util/openapi2proto/main.go:54:38: invalid operation: p.Value.AdditionalProperties != nil (mismatched types openapi3.AdditionalProperties and untyped nil)
    util/openapi2proto/main.go:55:24: cannot use p.Value.AdditionalProperties (variable of type openapi3.AdditionalProperties) as *openapi3.SchemaRef value in argument to getType
    util/openapi2proto/main.go:60:7: cannot convert "array" (untyped string constant) to type *openapi3.Types
    util/openapi2proto/main.go:72:17: cannot use p.Value.Type (variable of type *openapi3.Types) as string value in return statement
    util/openapi2proto/main.go:84:32: invalid operation: param.Schema.Value.Type != "" (mismatched types *openapi3.Types and untyped string)
    util/openapi2proto/main.go:175:17: resp.Get undefined (type *openapi3.Responses has no field or method Get)
    util/openapi2proto/main.go:175:17: too many errors
    FAIL    command-line-arguments [build failed]
    FAIL
    ```
    lbeckman314 committed Sep 25, 2024
    Configuration menu
    Copy the full SHA
    55f9895 View commit details
    Browse the repository at this point in the history
  20. Configuration menu
    Copy the full SHA
    adbeda3 View commit details
    Browse the repository at this point in the history
  21. Configuration menu
    Copy the full SHA
    30e3b87 View commit details
    Browse the repository at this point in the history
  22. Configuration menu
    Copy the full SHA
    6f59052 View commit details
    Browse the repository at this point in the history
  23. Configuration menu
    Copy the full SHA
    4bc0775 View commit details
    Browse the repository at this point in the history
  24. Configuration menu
    Copy the full SHA
    32598b2 View commit details
    Browse the repository at this point in the history
  25. Fix minor linting errors

    lbeckman314 committed Sep 25, 2024
    Configuration menu
    Copy the full SHA
    290de73 View commit details
    Browse the repository at this point in the history
  26. Configuration menu
    Copy the full SHA
    775416c View commit details
    Browse the repository at this point in the history
  27. Configuration menu
    Copy the full SHA
    ff6875a View commit details
    Browse the repository at this point in the history
  28. Configuration menu
    Copy the full SHA
    afe98c6 View commit details
    Browse the repository at this point in the history
  29. Configuration menu
    Copy the full SHA
    5556bd0 View commit details
    Browse the repository at this point in the history
  30. Configuration menu
    Copy the full SHA
    0cbd306 View commit details
    Browse the repository at this point in the history
  31. Configuration menu
    Copy the full SHA
    a88fe62 View commit details
    Browse the repository at this point in the history
  32. Update Nextflow tests

    lbeckman314 committed Sep 25, 2024
    Configuration menu
    Copy the full SHA
    34086dd View commit details
    Browse the repository at this point in the history
  33. Configuration menu
    Copy the full SHA
    5e1f1da View commit details
    Browse the repository at this point in the history
  34. Configuration menu
    Copy the full SHA
    5b75b46 View commit details
    Browse the repository at this point in the history
  35. Configuration menu
    Copy the full SHA
    8da896d View commit details
    Browse the repository at this point in the history
  36. Update Base64Encode test to match Github Actions test

    - TODO: investigate why this is necessary...
    lbeckman314 committed Sep 25, 2024
    Configuration menu
    Copy the full SHA
    064c1b1 View commit details
    Browse the repository at this point in the history
  37. Configuration menu
    Copy the full SHA
    5441fc9 View commit details
    Browse the repository at this point in the history
  38. Revert glob output change based on TesOutput spec

    - Wildcards in outputs will be uploaded to a directory, with no special handling for the filename.
    
    ```yaml
    tesOutput:
      properties:
        url:
         description: |-
            URL at which the TES server makes the output accessible after the task is complete. When tesOutput.path contains wildcards, it must be a directory; see `tesOutput.path_prefix` for details on how output URLs are constructed in this case.
    ```
    lbeckman314 committed Sep 25, 2024
    Configuration menu
    Copy the full SHA
    31748c0 View commit details
    Browse the repository at this point in the history
  39. Configuration menu
    Copy the full SHA
    627c17d View commit details
    Browse the repository at this point in the history
  40. Configuration menu
    Copy the full SHA
    8715660 View commit details
    Browse the repository at this point in the history
  41. Configuration menu
    Copy the full SHA
    0593325 View commit details
    Browse the repository at this point in the history
  42. Configuration menu
    Copy the full SHA
    f402761 View commit details
    Browse the repository at this point in the history
  43. Run go mod tidy

    lbeckman314 committed Sep 25, 2024
    Configuration menu
    Copy the full SHA
    9ba3beb View commit details
    Browse the repository at this point in the history
  44. Update Github Actions

    lbeckman314 committed Sep 25, 2024
    Configuration menu
    Copy the full SHA
    64b0885 View commit details
    Browse the repository at this point in the history
  45. Configuration menu
    Copy the full SHA
    b388751 View commit details
    Browse the repository at this point in the history
  46. Configuration menu
    Copy the full SHA
    d13c7a1 View commit details
    Browse the repository at this point in the history
  47. Update test suite

    lbeckman314 committed Sep 25, 2024
    Configuration menu
    Copy the full SHA
    5e37e48 View commit details
    Browse the repository at this point in the history
  48. Nextflow test debug

    lbeckman314 committed Sep 25, 2024
    Configuration menu
    Copy the full SHA
    a1fece6 View commit details
    Browse the repository at this point in the history
  49. Nextflow test debug

    lbeckman314 committed Sep 25, 2024
    Configuration menu
    Copy the full SHA
    258bcf6 View commit details
    Browse the repository at this point in the history
  50. Nextflow test debug

    lbeckman314 committed Sep 25, 2024
    Configuration menu
    Copy the full SHA
    125986b View commit details
    Browse the repository at this point in the history
  51. Nextflow test debug

    lbeckman314 committed Sep 25, 2024
    Configuration menu
    Copy the full SHA
    20ceb24 View commit details
    Browse the repository at this point in the history
  52. Configuration menu
    Copy the full SHA
    a8dd6c6 View commit details
    Browse the repository at this point in the history
  53. Update S3 tests

    lbeckman314 committed Sep 25, 2024
    Configuration menu
    Copy the full SHA
    206c75f View commit details
    Browse the repository at this point in the history
  54. Update S3 tests

    lbeckman314 committed Sep 25, 2024
    Configuration menu
    Copy the full SHA
    b43867d View commit details
    Browse the repository at this point in the history
  55. Configuration menu
    Copy the full SHA
    e012d2f View commit details
    Browse the repository at this point in the history
  56. Configuration menu
    Copy the full SHA
    983aad0 View commit details
    Browse the repository at this point in the history
  57. Configuration menu
    Copy the full SHA
    666beee View commit details
    Browse the repository at this point in the history
  58. Configuration menu
    Copy the full SHA
    532bc6b View commit details
    Browse the repository at this point in the history
  59. Configuration menu
    Copy the full SHA
    0912edc View commit details
    Browse the repository at this point in the history
  60. Update K8s support and documentation

    - Update docker images to use quay.io/ohsu-comp-bio/funnel
    lbeckman314 committed Sep 25, 2024
    Configuration menu
    Copy the full SHA
    1114f2c View commit details
    Browse the repository at this point in the history
  61. Update README.md

    lbeckman314 committed Sep 25, 2024
    Configuration menu
    Copy the full SHA
    a0c7a0c View commit details
    Browse the repository at this point in the history
  62. Configuration menu
    Copy the full SHA
    4effce6 View commit details
    Browse the repository at this point in the history
  63. Configuration menu
    Copy the full SHA
    149b6d0 View commit details
    Browse the repository at this point in the history
  64. Configuration menu
    Copy the full SHA
    524ade6 View commit details
    Browse the repository at this point in the history
  65. Configuration menu
    Copy the full SHA
    590a3e3 View commit details
    Browse the repository at this point in the history
  66. Configuration menu
    Copy the full SHA
    2ec10d8 View commit details
    Browse the repository at this point in the history

Commits on Sep 30, 2024

  1. Configuration menu
    Copy the full SHA
    1a1ae94 View commit details
    Browse the repository at this point in the history
  2. Configuration menu
    Copy the full SHA
    e7d8cbf View commit details
    Browse the repository at this point in the history
  3. Configuration menu
    Copy the full SHA
    234e934 View commit details
    Browse the repository at this point in the history

Commits on Oct 1, 2024

  1. Run go mod tidy

    lbeckman314 committed Oct 1, 2024
    Configuration menu
    Copy the full SHA
    c0f5920 View commit details
    Browse the repository at this point in the history
  2. Configuration menu
    Copy the full SHA
    1a32f86 View commit details
    Browse the repository at this point in the history
  3. Fix lint errors

    lbeckman314 committed Oct 1, 2024
    Configuration menu
    Copy the full SHA
    1fa7ebe View commit details
    Browse the repository at this point in the history
  4. Configuration menu
    Copy the full SHA
    db7a5ac View commit details
    Browse the repository at this point in the history
  5. Configuration menu
    Copy the full SHA
    56cba45 View commit details
    Browse the repository at this point in the history
  6. Configuration menu
    Copy the full SHA
    7d9742b View commit details
    Browse the repository at this point in the history
  7. Configuration menu
    Copy the full SHA
    8de5041 View commit details
    Browse the repository at this point in the history
  8. Configuration menu
    Copy the full SHA
    8e39bd3 View commit details
    Browse the repository at this point in the history
  9. Configuration menu
    Copy the full SHA
    064a224 View commit details
    Browse the repository at this point in the history

Commits on Oct 3, 2024

  1. Configuration menu
    Copy the full SHA
    33e1f2d View commit details
    Browse the repository at this point in the history