style(api): format files

jobbergate-api/alembic/env.py

@@ -7,6 +7,7 @@
 from jobbergate_api.apps.job_submissions import models  # noqa # must be imported for metadata to work
 from jobbergate_api.apps.models import Base
 from jobbergate_api.apps.job_script_templates import models  # noqa # must be imported for metadata to work
+
 # from jobbergate_api.metadata import (
 #    metadata as jobbergate_api_metadata,
 # )  # noqa # must be imported for metadata to work

jobbergate-api/alembic/versions/20240104_182646--44d41f873c8d_add_cancelled_status.py

@@ -5,6 +5,7 @@
 Create Date: 2024-01-04 18:26:46.943872
 
 """
+
 import sqlalchemy as sa
 from sqlalchemy.dialects import postgresql
 from alembic import op

jobbergate-api/alembic/versions/20240130_105238--ec2d2948fb41_remap_job_submissions_statuses.py

@@ -5,6 +5,7 @@
 Create Date: 2024-01-30 10:52:38.671713
 
 """
+
 import sqlalchemy as sa
 from sqlalchemy.dialects import postgresql
 

jobbergate-api/dev_tools/__init__.py

@@ -1,6 +1,7 @@
 """
 Provide helper commands for local development.
 """
+
 import typer
 
 from dev_tools import db, dev_server, show_env

jobbergate-api/dev_tools/dev_server.py

@@ -1,6 +1,7 @@
 """
 Provide command for starting a local development server for the API.
 """
+
 from time import sleep
 
 import typer

jobbergate-api/dev_tools/show_env.py

@@ -1,6 +1,7 @@
 """
 Provide command for showing the current environment.
 """
+
 import json
 
 import typer
@@ -19,8 +20,6 @@ def show_env(use_json: bool = typer.Option(False, "--json", help="Dump as JSON")
         output = json.dumps(settings.dict())
     else:
         output = "\n  ".join(
-            ["Jobbergate settings:"] + [
-                f"{k}: {v}" for (k, v) in settings.dict().items()
-            ],
+            ["Jobbergate settings:"] + [f"{k}: {v}" for (k, v) in settings.dict().items()],
         )
     print(output)

jobbergate-api/jobbergate_api/apps/dependencies.py

@@ -4,6 +4,7 @@
 Note:
     The dependencies can be reused multiple times, since FastAPI caches the results.
 """
+
 from contextlib import asynccontextmanager, contextmanager
 from dataclasses import dataclass
 from itertools import chain

jobbergate-api/jobbergate_api/apps/file_validation.py

@@ -1,6 +1,7 @@
 """
 Validation methods for the uploaded files.
 """
+
 from ast import parse as ast_parse
 from functools import wraps
 from pathlib import PurePath

jobbergate-api/jobbergate_api/apps/garbage_collector.py

@@ -1,4 +1,5 @@
 """Delete unused files from jobbergate's file storage."""
+
 from fastapi import BackgroundTasks
 from loguru import logger
 from sqlalchemy import select

jobbergate-api/jobbergate_api/apps/job_script_templates/routers.py

@@ -293,8 +293,7 @@ async def job_script_workflow_get_file(
 )
 async def job_script_workflow_upload_file(
     id_or_identifier: int | str = Path(),
-    runtime_config: RunTimeConfig
-    | None = Body(
+    runtime_config: RunTimeConfig | None = Body(
         None, description="Runtime configuration is optional when the workflow file already exists"
     ),
     upload_file: UploadFile = File(..., description="File to upload"),

jobbergate-api/jobbergate_api/apps/job_script_templates/services.py

@@ -1,4 +1,5 @@
 """Services for the job_script_templates resource, including module specific business logic."""
+
 from typing import Any
 
 from buzz import require_condition

jobbergate-api/jobbergate_api/apps/job_scripts/routers.py

@@ -1,4 +1,5 @@
 """Router for the Job Script Template resource."""
+
 from typing import cast
 
 from buzz import handle_errors
@@ -202,8 +203,7 @@ async def job_script_get(
 )
 async def job_script_get_list(
     list_params: ListParams = Depends(),
-    from_job_script_template_id: int
-    | None = Query(
+    from_job_script_template_id: int | None = Query(
         None,
         description="Filter job-scripts by the job-script-template-id they were created from.",
     ),

jobbergate-api/jobbergate_api/apps/job_scripts/schemas.py

@@ -1,6 +1,7 @@
 """
 JobScript resource schema.
 """
+
 from datetime import datetime
 from textwrap import dedent
 from typing import Any

jobbergate-api/jobbergate_api/apps/job_scripts/services.py

@@ -1,4 +1,5 @@
 """Services for the job_scripts resource, including module specific business logic."""
+
 from typing import Any, NamedTuple
 
 from buzz import enforce_defined, require_condition

jobbergate-api/jobbergate_api/apps/job_submissions/routers.py

@@ -108,18 +108,15 @@ async def job_submission_get(
 )
 async def job_submission_get_list(
     list_params: ListParams = Depends(),
-    slurm_job_ids: str
-    | None = Query(
+    slurm_job_ids: str | None = Query(
         None,
         description="Comma-separated list of slurm-job-ids to match active job_submissions",
     ),
-    submit_status: JobSubmissionStatus
-    | None = Query(
+    submit_status: JobSubmissionStatus | None = Query(
         None,
         description="Limit results to those with matching status",
     ),
-    from_job_script_id: int
-    | None = Query(
+    from_job_script_id: int | None = Query(
         None,
         description="Filter job-submissions by the job-script-id they were created from.",
     ),

jobbergate-api/jobbergate_api/config.py

@@ -3,6 +3,7 @@
 
 Pull settings from environment variables or a .env file if available.
 """
+
 from enum import Enum
 from typing import Optional
 

jobbergate-api/jobbergate_api/email_notification.py

@@ -1,6 +1,7 @@
 """
 Email notification system for Jobbergate.
 """
+
 from dataclasses import dataclass
 from typing import List, Optional, Union
 

jobbergate-api/jobbergate_api/main.py

@@ -1,6 +1,7 @@
 """
 Main file to startup the fastapi server.
 """
+
 from contextlib import asynccontextmanager
 
 import asyncpg

jobbergate-api/jobbergate_api/security.py

@@ -3,6 +3,7 @@
 
 Also provides a factory function for TokenSecurity to reduce boilerplate.
 """
+
 from armasec import Armasec, TokenPayload
 from armasec.schemas import DomainConfig
 from armasec.token_security import PermissionMode

jobbergate-api/pyproject.toml

@@ -80,7 +80,7 @@ dev-tools = "dev_tools:app"
 
 [tool.black]
 line-length = 110
-target-versions = ["py38", "py39", "py310"]
+target-version = ["py38", "py39", "py310"]
 
 [tool.isort]
 line_length = 110

jobbergate-api/tests/apps/job_script_templates/test_routers.py

@@ -1,4 +1,5 @@
 """Test the router for the Job Script Template resource."""
+
 import json
 
 import pytest

jobbergate-api/tests/apps/job_script_templates/test_services.py

@@ -1,4 +1,5 @@
 """Database models for the smart template resource."""
+
 from typing import Any
 
 import pytest

jobbergate-api/tests/apps/job_scripts/test_routers.py

@@ -1,4 +1,5 @@
 """Tests for the /job-scripts/ endpoint."""
+
 import pytest
 from fastapi import HTTPException, status
 from loguru import logger

jobbergate-api/tests/apps/job_scripts/test_services.py

@@ -1,4 +1,5 @@
 """Database models for the job scripts resource."""
+
 from itertools import product
 from typing import Any
 

jobbergate-api/tests/apps/job_scripts/test_tools.py

@@ -1,6 +1,7 @@
 """
 Test job-script files.
 """
+
 import snick
 
 from jobbergate_api.apps.job_scripts.tools import inject_sbatch_params

jobbergate-api/tests/apps/test_main.py

@@ -1,6 +1,7 @@
 """
 Provide unit tests for the main app.
 """
+
 import pytest
 from fastapi import status
 from httpx import AsyncClient

jobbergate-api/tests/apps/test_models.py

@@ -1,4 +1,5 @@
 """Test the the models."""
+
 import pytest
 from sqlalchemy import String
 

jobbergate-api/tests/test_email_notification.py

@@ -1,6 +1,7 @@
 """
 Test the email notification system at Jobbergate.
 """
+
 from unittest import mock
 
 import pytest

jobbergate-api/tests/test_security.py

@@ -1,6 +1,7 @@
 """
 Test the security module.
 """
+
 from unittest.mock import patch
 
 import pytest