Add converter for TunedThresholdClassifierCV (#1107)

* Add converter for TunedThresholdClassifierCV Signed-off-by: Xavier Dupre <[email protected]> * upgrade version Signed-off-by: Xavier Dupre <[email protected]> * documentation Signed-off-by: Xavier Dupre <[email protected]> * update numpy version Signed-off-by: Xavier Dupre <[email protected]> * do not use numpy 2 Signed-off-by: Xavier Dupre <[email protected]> * delay import Signed-off-by: Xavier Dupre <[email protected]> --------- Signed-off-by: Xavier Dupre <[email protected]>
onnx · Jun 19, 2024 · ebd20e9 · ebd20e9
1 parent 4dad29e
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Showing 10 changed files with 140 additions and 12 deletions.
diff --git a/.github/workflows/linux-ci.yml b/.github/workflows/linux-ci.yml
@@ -11,35 +11,35 @@ jobs:
         include:
           - sklearn_version: '==1.5.0'
             documentation: 0
-            numpy_version: '>=1.21.1'
+            numpy_version: '>=1.21.1,<2.0'
             scipy_version: '>=1.7.0'
             onnx_version: 'onnx==1.16.0'
             onnxrt_version: 'onnxruntime==1.18.0'
             python_version: '3.12'
           - python_version: '3.12'
             documentation: 0
-            numpy_version: '>=1.21.1'
+            numpy_version: '>=1.21.1,<2.0'
             scipy_version: '>=1.7.0'
             onnx_version: 'onnx==1.16.0'
             onnxrt_version: 'onnxruntime==1.18.0'
             sklearn_version: '==1.4.2'
           - python_version: '3.11'
             documentation: 1
-            numpy_version: '>=1.21.1'
+            numpy_version: '>=1.21.1,<2.0'
             scipy_version: '>=1.7.0'
             onnx_version: 'onnx<1.16.0'
             onnxrt_version: 'onnxruntime==1.17.3'
             sklearn_version: '==1.3.2'
           - python_version: '3.10'
             documentation: 0
-            numpy_version: '>=1.21.1'
+            numpy_version: '>=1.21.1,<2.0'
             scipy_version: '>=1.7.0'
             onnx_version: 'onnx==1.14.1'
             onnxrt_version: 'onnxruntime==1.16.0'
             sklearn_version: '==1.2.2'
           - python_version: '3.9'
             documentation: 0
-            numpy_version: '>=1.21.1'
+            numpy_version: '>=1.21.1,<2.0'
             scipy_version: '>=1.7.0'
             onnx_version: 'onnx==1.13.0'
             onnxrt_version: 'onnxruntime==1.14.0'

diff --git a/.github/workflows/windows-macos-ci.yml b/.github/workflows/windows-macos-ci.yml
@@ -11,37 +11,37 @@ jobs:
         include:
           - sklearn_version: '==1.5.0'
             python_version: '3.11'
-            numpy_version: '>=1.21.1'
+            numpy_version: '>=1.21.1,<2.0'
             scipy_version: '>=1.7.0'
             onnx_version: 'onnx==1.16.0'
             onnxrt_version: 'onnxruntime==1.18.0'
           - python_version: '3.11'
-            numpy_version: '>=1.21.1'
+            numpy_version: '>=1.21.1,<2.0'
             scipy_version: '>=1.7.0'
             onnx_version: 'onnx<1.16.0'
             onnxrt_version: 'onnxruntime<1.18.0'
             sklearn_version: '==1.3.2'
           - python_version: '3.10'
-            numpy_version: '>=1.21.1'
+            numpy_version: '>=1.21.1,<2.0'
             scipy_version: '>=1.7.0'
             onnx_version: 'onnx<1.15'
             onnxrt_version: 'onnxruntime<1.17.0'
             sklearn_version: '==1.2.2'
           - python_version: '3.9'
-            numpy_version: '>=1.21.1'
+            numpy_version: '>=1.21.1,<2.0'
             scipy_version: '>=1.7.0'
             onnx_version: 'onnx<1.14'
             onnxrt_version: 'onnxruntime<1.16.0'
             sklearn_version: '==1.2.2'
           - sklearn_version: '==1.4.2'
             python_version: '3.11'
-            numpy_version: '>=1.21.1'
+            numpy_version: '>=1.21.1,<2.0'
             scipy_version: '>=1.7.0'
             onnx_version: 'onnx>=1.16.0'
             onnxrt_version: 'onnxruntime>=1.18.0'
           - sklearn_version: '==1.1.3'
             python_version: '3.11'
-            numpy_version: '>=1.21.1'
+            numpy_version: '>=1.21.1,<2.0'
             scipy_version: '>=1.7.0'
             onnx_version: 'onnx>=1.16.0'
             onnxrt_version: 'onnxruntime>=1.18.0'

diff --git a/docs/index.rst b/docs/index.rst
@@ -129,4 +129,5 @@ It is licensed with `Apache License v2.0 <../LICENSE>`_.
 
 **Older versions**
 
+* `1.17.0 <versions/v1.17.0/>`_
 * `1.16.0 <versions/v1.16.0/>`_
diff --git a/skl2onnx/__init__.py b/skl2onnx/__init__.py
@@ -3,7 +3,7 @@
 """
 Main entry point to the converter from the *scikit-learn* to *onnx*.
 """
-__version__ = "1.17.0"
+__version__ = "1.18.0"
 __author__ = "Microsoft"
 __producer__ = "skl2onnx"
 __producer_version__ = __version__

diff --git a/skl2onnx/_supported_operators.py b/skl2onnx/_supported_operators.py
@@ -131,6 +131,11 @@
 # GridSearchCV
 from sklearn.model_selection import GridSearchCV
 
+try:
+    from sklearn.model_selection import TunedThresholdClassifierCV
+except ImportError:
+    TunedThresholdClassifierCV = None
+
 # MultiOutput
 from sklearn.multioutput import MultiOutputClassifier, MultiOutputRegressor
 
@@ -462,6 +467,7 @@ def build_sklearn_operator_name_map():
             TfidfVectorizer,
             TfidfTransformer,
             TruncatedSVD,
+            TunedThresholdClassifierCV,
             TweedieRegressor,
             VarianceThreshold,
             VotingClassifier,

diff --git a/skl2onnx/operator_converters/__init__.py b/skl2onnx/operator_converters/__init__.py
@@ -64,6 +64,7 @@
 from . import text_vectoriser
 from . import tfidf_transformer
 from . import tfidf_vectoriser
+from . import tuned_threshold_classifier
 from . import voting_classifier
 from . import voting_regressor
 from . import zip_map
@@ -130,6 +131,7 @@
     text_vectoriser,
     tfidf_transformer,
     tfidf_vectoriser,
+    tuned_threshold_classifier,
     voting_classifier,
     voting_regressor,
     zip_map,

diff --git a/skl2onnx/operator_converters/tuned_threshold_classifier.py b/skl2onnx/operator_converters/tuned_threshold_classifier.py
@@ -0,0 +1,42 @@
+# SPDX-License-Identifier: Apache-2.0
+
+from ..common._registration import register_converter
+from ..common._topology import Scope, Operator
+from ..common._container import ModelComponentContainer
+from ..common.data_types import Int64TensorType
+from .._supported_operators import sklearn_operator_name_map
+
+
+def convert_sklearn_tuned_threshold_classifier(
+    scope: Scope, operator: Operator, container: ModelComponentContainer
+):
+    estimator = operator.raw_operator.estimator_
+    op_type = sklearn_operator_name_map[type(estimator)]
+
+    this_operator = scope.declare_local_operator(op_type, estimator)
+    this_operator.inputs = operator.inputs
+
+    label_name = scope.declare_local_variable("label_tuned", Int64TensorType())
+    prob_name = scope.declare_local_variable(
+        "proba_tuned", operator.outputs[1].type.__class__()
+    )
+    this_operator.outputs.append(label_name)
+    this_operator.outputs.append(prob_name)
+
+    container.add_node(
+        "Identity", [label_name.onnx_name], [operator.outputs[0].full_name]
+    )
+    container.add_node(
+        "Identity", [prob_name.onnx_name], [operator.outputs[1].full_name]
+    )
+
+
+register_converter(
+    "SklearnTunedThresholdClassifierCV",
+    convert_sklearn_tuned_threshold_classifier,
+    options={
+        "zipmap": [True, False, "columns"],
+        "output_class_labels": [False, True],
+        "nocl": [True, False],
+    },
+)
diff --git a/skl2onnx/shape_calculators/__init__.py b/skl2onnx/shape_calculators/__init__.py
@@ -48,6 +48,7 @@
 from . import svd
 from . import support_vector_machines
 from . import text_vectorizer
+from . import tuned_threshold_classifier
 from . import tfidf_transformer
 from . import voting_classifier
 from . import voting_regressor
@@ -100,6 +101,7 @@
     support_vector_machines,
     text_vectorizer,
     tfidf_transformer,
+    tuned_threshold_classifier,
     voting_classifier,
     voting_regressor,
     zip_map,

diff --git a/skl2onnx/shape_calculators/tuned_threshold_classifier.py b/skl2onnx/shape_calculators/tuned_threshold_classifier.py
@@ -0,0 +1,16 @@
+# SPDX-License-Identifier: Apache-2.0
+
+from ..common._registration import register_shape_calculator
+from ..common.utils import check_input_and_output_numbers
+from ..common.shape_calculator import _infer_linear_classifier_output_types
+
+
+def tuned_threshold_classifier_shape_calculator(operator):
+    check_input_and_output_numbers(operator, output_count_range=2)
+
+    _infer_linear_classifier_output_types(operator)
+
+
+register_shape_calculator(
+    "SklearnTunedThresholdClassifierCV", tuned_threshold_classifier_shape_calculator
+)
diff --git a/tests/test_sklearn_tuned_threshold_classifier.py b/tests/test_sklearn_tuned_threshold_classifier.py
@@ -0,0 +1,59 @@
+# SPDX-License-Identifier: Apache-2.0
+
+import unittest
+import numpy as np
+from sklearn.datasets import make_classification
+from sklearn.ensemble import RandomForestClassifier
+from sklearn.model_selection import train_test_split
+from sklearn.utils._testing import ignore_warnings
+from skl2onnx import to_onnx
+from skl2onnx.common.data_types import FloatTensorType
+from test_utils import dump_data_and_model, TARGET_OPSET
+
+
+def has_tuned_theshold_classifier():
+    try:
+        from sklearn.model_selection import TunedThresholdClassifierCV  # noqa: F401
+    except ImportError:
+        return False
+    return True
+
+
+class TestSklearnTunedThresholdClassifierConverter(unittest.TestCase):
+    @unittest.skipIf(
+        not has_tuned_theshold_classifier(),
+        reason="TunedThresholdClassifierCV not available",
+    )
+    @ignore_warnings(category=FutureWarning)
+    def test_tuned_threshold_classifier(self):
+        from sklearn.model_selection import TunedThresholdClassifierCV
+
+        X, y = make_classification(
+            n_samples=1_000, weights=[0.9, 0.1], class_sep=0.8, random_state=42
+        )
+        X_train, X_test, y_train, y_test = train_test_split(
+            X, y, stratify=y, random_state=42
+        )
+        classifier = RandomForestClassifier(random_state=0)
+
+        classifier_tuned = TunedThresholdClassifierCV(
+            classifier, scoring="balanced_accuracy"
+        ).fit(X_train, y_train)
+
+        model_onnx = to_onnx(
+            classifier_tuned,
+            initial_types=[("X", FloatTensorType([None, X_train.shape[1]]))],
+            target_opset=TARGET_OPSET - 1,
+            options={"zipmap": False},
+        )
+        self.assertTrue(model_onnx is not None)
+        dump_data_and_model(
+            X_test[:10].astype(np.float32),
+            classifier_tuned,
+            model_onnx,
+            basename="SklearnTunedThresholdClassifier",
+        )
+
+
+if __name__ == "__main__":
+    unittest.main(verbosity=2)
Original file line number	Diff line number	Diff line change
Expand Up		@@ -129,4 +129,5 @@ It is licensed with `Apache License v2.0 <../LICENSE>`_.

		Older versions

		* `1.17.0 <versions/v1.17.0/>`_
		* `1.16.0 <versions/v1.16.0/>`_