Merge pull request #19 from ncbo/master

Sync: bring OntoPortal up-to-date with BioPortal releases 6.15.0 and onward

.gitignore

@@ -42,3 +42,8 @@ node_modules
 /config/credentials/test.key
 /config/credentials/staging.key
 /config/credentials/production.key
+
+/app/assets/builds/*
+!/app/assets/builds/.keep
+
+/node_modules

Gemfile

@@ -3,29 +3,47 @@
 source 'https://rubygems.org'
 
 # Bundle edge Rails instead: gem 'rails', github: 'rails/rails'
-gem 'rails', '6.1.7.3'
+gem 'rails', '7.0.8'
 
-gem 'sass-rails', '~> 5.0'
-gem 'terser'
-# See https://github.com/rails/execjs#readme for more supported runtimes
-# gem 'therubyracer', platforms: :ruby
-# gem 'duktape'
+# The original asset pipeline for Rails [https://github.com/rails/sprockets-rails]
+gem 'sprockets-rails', require: 'sprockets/railtie'
+
+# Bundle and transpile JavaScript [https://github.com/rails/jsbundling-rails]
+gem 'jsbundling-rails', '~> 1.3'
+
+# Hotwire's SPA-like page accelerator [https://turbo.hotwired.dev]
+gem 'turbo-rails'
+
+# Hotwire's modest JavaScript framework [https://stimulus.hotwired.dev]
+gem 'stimulus-rails'
+
+# Build JSON APIs with ease [https://github.com/rails/jbuilder]
+# gem 'jbuilder'
+
+# Use Redis for Action Cable
+gem 'redis', '~> 4.0'
+
+# Use Kredis to get higher-level data types in Redis [https://github.com/rails/kredis]
+# gem 'kredis'
+
+# Use Active Model has_secure_password [https://guides.rubyonrails.org/active_model_basics.html#securepassword]
+# gem "bcrypt", "~> 3.1.7"
+
+# Windows does not include zoneinfo files, so bundle the tzinfo-data gem
+gem 'tzinfo-data', platforms: %i[mingw mswin x64_mingw jruby]
+
+# Reduces boot times through caching; required in config/boot.rb
+gem 'bootsnap', require: false
+
+# Use Sass to process CSS
+gem 'sassc-rails'
 
 gem 'bootstrap', '~> 5.2.3'
 gem 'chart-js-rails'
 gem 'jquery-rails'
 gem 'jquery-ui-rails'
 gem 'select2-rails'
 
-# To use ActiveModel has_secure_password
-# gem 'bcrypt-ruby', '~> 3.0.0'
-
-# To use Jbuilder templates for JSON
-# gem 'jbuilder'
-
-# To use debugger
-# gem 'debugger'
-
 gem 'base64', '0.1.0'
 gem 'cube-ruby', require: 'cube'
 gem 'dalli'
@@ -36,9 +54,11 @@ gem 'graphql-client'
 gem 'haml', '~> 5.1'
 gem 'i18n'
 gem 'iconv'
+gem 'iso-639', '~> 0.3.6'
 gem 'multi_json'
 gem 'mysql2', '0.5.5'
 gem 'oj'
+gem 'ontologies_api_client', github: 'ncbo/ontologies_api_ruby_client', tag: 'v2.2.5'
 gem 'open_uri_redirections'
 gem 'pry'
 gem 'psych', '< 4'
@@ -49,39 +69,42 @@ gem 'recaptcha', '~> 5.9.0'
 gem 'rest-client'
 gem 'rexml', '~> 3'
 gem 'stackprof', require: false
+gem 'terser'
 gem 'thin'
 gem 'will_paginate', '~> 3.0'
 
-gem 'ontologies_api_client', github: 'ncbo/ontologies_api_ruby_client', tag: 'v2.2.4'
-
 group :staging, :production do
-  # application monitoring
+  # Application monitoring
   gem 'newrelic_rpm'
-  # logs in json format, useful for shipping logs to logstash
+  # Logs in json format, useful for shipping logs to logstash
   # gem 'rackstash', git: 'https://github.com/planio-gmbh/rackstash.git'
   # gem 'logstash-logger'
 end
 
 group :development do
-  # Capistrano Deployment
+  # Capistrano deployment
   gem 'bcrypt_pbkdf', '>= 1.0', '< 2.0', require: false # https://github.com/miloserdow/capistrano-deploy/issues/42
   gem 'capistrano', '~> 3.17', require: false
   gem 'capistrano-bundler', require: false
-  gem 'capistrano-rbenv', require: false
   gem 'capistrano-locally', require: false
   gem 'capistrano-passenger', require: false
   gem 'capistrano-rails', '~> 1.4', require: false
+  gem 'capistrano-rbenv', require: false
   gem 'capistrano-yarn', require: false
   gem 'ed25519', '>= 1.2', '< 2.0', require: false # https://github.com/miloserdow/capistrano-deploy/issues/42
   gem 'html2haml'
   gem 'listen'
-  # static code analysis
+
+  # Static code analysis
   gem 'brakeman', require: false
   gem 'rubocop', require: false
+
   # gem 'i18n-debug'
 end
 
-group :test, :development do
+group :development, :test do
+  # See https://guides.rubyonrails.org/debugging_rails_applications.html#debugging-with-the-debug-gem
+  gem 'debug', platforms: %i[mri mingw x64_mingw]
   gem 'rspec-rails'
 end