build-deploy-rmd #249
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| on: | |
| push: | |
| branches: | |
| - master | |
| pull_request: | |
| branches: | |
| - master | |
| schedule: | |
| - cron: '0 9 * * 3' | |
| workflow_dispatch: | |
| name: build-deploy-rmd | |
| # Sets permissions of the GITHUB_TOKEN to allow deployment to GitHub Pages | |
| # permissions: | |
| # contents: read | |
| # pages: write | |
| # id-token: write | |
| # Allow only one concurrent deployment, skipping runs queued between the run in-progress and latest queued. | |
| # However, do NOT cancel in-progress runs as we want to allow these production deployments to complete. | |
| # concurrency: | |
| # group: "pages" | |
| # cancel-in-progress: false | |
| jobs: | |
| build-rmd: | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {os: macOS-latest, r: 'release'} | |
| env: | |
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
| RSPM: ${{ matrix.config.rspm }} | |
| CRAN: ${{ matrix.config.cran }} | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - name: Check out repo | |
| uses: actions/checkout@v2 | |
| with: | |
| submodules: true | |
| - name: Set up R | |
| uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| - name: Set up pandoc | |
| uses: r-lib/actions/setup-pandoc@v2 | |
| ## rcrossref requires an email address associated with a query | |
| - name: Set up crossref email | |
| run: | | |
| echo crossref_email=\"${{ secrets.CROSSREF_EMAIL }}\" >> ~/.Renviron | |
| - name: Install dependencies | |
| run: | | |
| install.packages(c('remotes', 'dplyr', 'ggplot2', 'rmarkdown', | |
| 'knitr', 'tibble', 'tidyr', | |
| 'lubridate', 'gh', 'jsonlite', 'purrr', | |
| 'DT', 'plotly', 'citecorp', 'readr', | |
| 'viridis', 'wordcloud', 'stringr', 'gt', | |
| 'rworldmap', 'openalexR'), Ncpu = 2L) | |
| remotes::install_github('ropensci/rcrossref') | |
| shell: Rscript {0} | |
| - name: Session info | |
| run: | | |
| install.packages('sessioninfo', Ncpus = 2L) | |
| options(width = 100) | |
| pkgs <- installed.packages()[, "Package"] | |
| sessioninfo::session_info(pkgs, include_base = TRUE) | |
| shell: Rscript {0} | |
| - name: Render site | |
| run: | | |
| rmarkdown::render(input = "joss-submission-analytics.Rmd", clean = FALSE) | |
| shell: Rscript {0} | |
| - name: Prepare files to deploy | |
| run: | | |
| mkdir _site | |
| touch _site/.nojekyll | |
| cp -r joss-submission-analytics_files joss-submission-analytics.html _site/ | |
| cp -r joss_submission_analytics.rds _site/ | |
| cp -r joss_submission_citations_byjournal.tsv _site/ | |
| cp -r joss_submission_citations.tsv _site/ | |
| - name: Deploy 🚀 | |
| uses: JamesIves/github-pages-deploy-action@releases/v4 | |
| with: | |
| ACCESS_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| BRANCH: gh-pages | |
| FOLDER: _site | |
| - name: Upload check results | |
| if: failure() | |
| uses: actions/upload-artifact@master | |
| with: | |
| name: ${{ runner.os }}-r${{ matrix.config.r }}-results | |
| path: check | |
| - name: upload artifact | |
| uses: actions/upload-artifact@v1 | |
| with: | |
| name: submissionanalytics | |
| path: joss_submission_analytics.rds | |
| ## From 2024-06-30, need to use GitHub Actions for deployment | |
| # - name: Setup Pages | |
| # uses: actions/configure-pages@v5 | |
| # | |
| # - name: Build with Jekyll | |
| # uses: actions/jekyll-build-pages@v1 | |
| # with: | |
| # source: ./_site | |
| # destination: ./_site_jkl | |
| # | |
| # - name: Upload artifact | |
| # uses: actions/upload-pages-artifact@v3 | |
| # with: | |
| # path: ./_site_jkl | |
| # Deployment job | |
| # deploy: | |
| # environment: | |
| # name: github-pages | |
| # url: ${{ steps.deployment.outputs.page_url }} | |
| # runs-on: ubuntu-latest | |
| # needs: build-rmd | |
| # | |
| # steps: | |
| # - name: Deploy to GitHub Pages | |
| # id: deployment | |
| # uses: actions/deploy-pages@v4 |