release build #148

Run time

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Job	Run time
sync_s3	1m 8s
build / Build and push target folder	5m 27s
build / Build and Deploy Docker Images (publish, /, transfer, /home/runner/work/openpipeline/openpipeline...	2m 26s
build / Build and Deploy Docker Images (make_reference, /, reference, /home/runner/work/openpipeline/open...	2m 51s
build / Build and Deploy Docker Images (build_cellranger_reference, /, reference, /home/runner/work/openp...	2m 20s
build / Build and Deploy Docker Images (build_bdrhap_reference, /, reference, /home/runner/work/openpipel...	2m 48s
build / Build and Deploy Docker Images (download_file, /, download, /home/runner/work/openpipeline/openpi...	2m 10s
build / Build and Deploy Docker Images (sync_test_resources, /, download, /home/runner/work/openpipeline/...	14m 23s
build / Build and Deploy Docker Images (popv, /, annotate, /home/runner/work/openpipeline/openpipeline/sr...	10m 10s
build / Build and Deploy Docker Images (souporcell, /, genetic_demux, /home/runner/work/openpipeline/open...	18m 14s
build / Build and Deploy Docker Images (scsplit, /, genetic_demux, /home/runner/work/openpipeline/openpip...	1m 57s
build / Build and Deploy Docker Images (demuxlet, /, genetic_demux, /home/runner/work/openpipeline/openpi...	8m 28s
build / Build and Deploy Docker Images (bcftools, /, genetic_demux, /home/runner/work/openpipeline/openpi...	4m 20s
build / Build and Deploy Docker Images (vireo, /, genetic_demux, /home/runner/work/openpipeline/openpipel...	3m 3s
build / Build and Deploy Docker Images (dsc_pileup, /, genetic_demux, /home/runner/work/openpipeline/open...	7m 23s
build / Build and Deploy Docker Images (freemuxlet, /, genetic_demux, /home/runner/work/openpipeline/open...	8m 0s
build / Build and Deploy Docker Images (freebayes, /, genetic_demux, /home/runner/work/openpipeline/openp...	3m 1s
build / Build and Deploy Docker Images (samtools, /, genetic_demux, /home/runner/work/openpipeline/openpi...	17m 38s
build / Build and Deploy Docker Images (cellsnp, /, genetic_demux, /home/runner/work/openpipeline/openpip...	3m 20s
build / Build and Deploy Docker Images (split_modalities, /, dataflow, /home/runner/work/openpipeline/ope...	1m 39s
build / Build and Deploy Docker Images (concat, /, dataflow, /home/runner/work/openpipeline/openpipeline/...	3m 8s
build / Build and Deploy Docker Images (concatenate_h5mu, /, dataflow, /home/runner/work/openpipeline/ope...	3m 16s
build / Build and Deploy Docker Images (merge, /, dataflow, /home/runner/work/openpipeline/openpipeline/s...	1m 32s
build / Build and Deploy Docker Images (leiden, /, cluster, /home/runner/work/openpipeline/openpipeline/s...	3m 21s
build / Build and Deploy Docker Images (bcl_convert, /, demux, /home/runner/work/openpipeline/openpipelin...	2m 58s
build / Build and Deploy Docker Images (bcl2fastq, /, demux, /home/runner/work/openpipeline/openpipeline/...	2m 3s
build / Build and Deploy Docker Images (cellranger_mkfastq, /, demux, /home/runner/work/openpipeline/open...	3m 4s
build / Build and Deploy Docker Images (score_genes_cell_cycle_scanpy, /, feature_annotation, /home/runne...	16m 42s
build / Build and Deploy Docker Images (highly_variable_features_scanpy, /, feature_annotation, /home/run...	3m 52s
build / Build and Deploy Docker Images (score_genes_scanpy, /, feature_annotation, /home/runner/work/open...	17m 48s
build / Build and Deploy Docker Images (clr, /, transform, /home/runner/work/openpipeline/openpipeline/sr...	2m 13s
build / Build and Deploy Docker Images (delete_layer, /, transform, /home/runner/work/openpipeline/openpi...	1m 34s
build / Build and Deploy Docker Images (log1p, /, transform, /home/runner/work/openpipeline/openpipeline/...	3m 20s
build / Build and Deploy Docker Images (move_layer, /, transform, /home/runner/work/openpipeline/openpipe...	2m 41s
build / Build and Deploy Docker Images (scale, /, transform, /home/runner/work/openpipeline/openpipeline/...	4m 9s
build / Build and Deploy Docker Images (regress_out, /, transform, /home/runner/work/openpipeline/openpip...	1m 56s
build / Build and Deploy Docker Images (normalize_total, /, transform, /home/runner/work/openpipeline/ope...	2m 5s
build / Build and Deploy Docker Images (make_params, /, files, /home/runner/work/openpipeline/openpipelin...	3m 26s
build / Build and Deploy Docker Images (xgboost, /, labels_transfer, /home/runner/work/openpipeline/openp...	3m 17s
build / Build and Deploy Docker Images (knn, /, labels_transfer, /home/runner/work/openpipeline/openpipel...	2m 48s
build / Build and Deploy Docker Images (htseq_count, /, mapping, /home/runner/work/openpipeline/openpipel...	2m 17s
build / Build and Deploy Docker Images (star_build_reference, /, mapping, /home/runner/work/openpipeline/...	5m 42s
build / Build and Deploy Docker Images (multi_star, /, mapping, /home/runner/work/openpipeline/openpipeli...	5m 17s
build / Build and Deploy Docker Images (cellranger_count_split, /, mapping, /home/runner/work/openpipelin...	3m 9s
build / Build and Deploy Docker Images (samtools_sort, /, mapping, /home/runner/work/openpipeline/openpip...	1m 7s
build / Build and Deploy Docker Images (star_align_v273a, /, mapping, /home/runner/work/openpipeline/open...	4m 13s
build / Build and Deploy Docker Images (bd_rhapsody, /, mapping, /home/runner/work/openpipeline/openpipel...	3m 17s
build / Build and Deploy Docker Images (cellranger_count, /, mapping, /home/runner/work/openpipeline/open...	3m 1s
build / Build and Deploy Docker Images (cellranger_multi, /, mapping, /home/runner/work/openpipeline/open...	1m 57s
build / Build and Deploy Docker Images (star_align, /, mapping, /home/runner/work/openpipeline/openpipeli...	5m 39s
build / Build and Deploy Docker Images (multi_star_to_h5mu, /, mapping, /home/runner/work/openpipeline/op...	2m 27s
build / Build and Deploy Docker Images (htseq_count_to_h5mu, /, mapping, /home/runner/work/openpipeline/o...	10m 5s
build / Build and Deploy Docker Images (filter_10xh5, /, process_10xh5, /home/runner/work/openpipeline/op...	2m 39s
build / Build and Deploy Docker Images (add_id, /, metadata, /home/runner/work/openpipeline/openpipeline/...	3m 19s
build / Build and Deploy Docker Images (grep_annotation_column, /, metadata, /home/runner/work/openpipeli...	2m 58s
build / Build and Deploy Docker Images (join_csv, /, metadata, /home/runner/work/openpipeline/openpipelin...	2m 47s
build / Build and Deploy Docker Images (move_obsm_to_obs, /, metadata, /home/runner/work/openpipeline/ope...	2m 28s
build / Build and Deploy Docker Images (join_uns_to_obs, /, metadata, /home/runner/work/openpipeline/open...	2m 41s
build / Build and Deploy Docker Images (tar_extract, /, compression, /home/runner/work/openpipeline/openp...	14m 31s
build / Build and Deploy Docker Images (compress_h5mu, /, compression, /home/runner/work/openpipeline/ope...	1m 30s
build / Build and Deploy Docker Images (cellbender_remove_background, /, correction, /home/runner/work/op...	12m 59s
build / Build and Deploy Docker Images (cellbender_remove_background_v0_2, /, correction, /home/runner/wo...	17m 11s
build / Build and Deploy Docker Images (bbknn, /, neighbors, /home/runner/work/openpipeline/openpipeline/...	2m 33s
build / Build and Deploy Docker Images (find_neighbors, /, neighbors, /home/runner/work/openpipeline/open...	2m 6s
build / Build and Deploy Docker Images (from_h5mu_to_h5ad, /, convert, /home/runner/work/openpipeline/ope...	3m 11s
build / Build and Deploy Docker Images (from_10xmtx_to_h5mu, /, convert, /home/runner/work/openpipeline/o...	2m 7s
build / Build and Deploy Docker Images (from_10xh5_to_h5mu, /, convert, /home/runner/work/openpipeline/op...	4m 39s
build / Build and Deploy Docker Images (from_h5mu_to_seurat, /, convert, /home/runner/work/openpipeline/o...	6m 48s
build / Build and Deploy Docker Images (from_h5ad_to_h5mu, /, convert, /home/runner/work/openpipeline/ope...	2m 4s
build / Build and Deploy Docker Images (from_bd_to_10x_molecular_barcode_tags, /, convert, /home/runner/w...	1m 2s
build / Build and Deploy Docker Images (from_cellranger_multi_to_h5mu, /, convert, /home/runner/work/open...	3m 47s
build / Build and Deploy Docker Images (from_bdrhap_to_h5mu, /, convert, /home/runner/work/openpipeline/o...	27m 7s
build / Build and Deploy Docker Images (multiqc, /, qc, /home/runner/work/openpipeline/openpipeline/src/q...	3m 19s
build / Build and Deploy Docker Images (calculate_qc_metrics, /, qc, /home/runner/work/openpipeline/openp...	2m 45s
build / Build and Deploy Docker Images (fastqc, /, qc, /home/runner/work/openpipeline/openpipeline/src/qc...	3m 28s
build / Build and Deploy Docker Images (run_cellxgene, /, interactive, /home/runner/work/openpipeline/ope...	2m 26s
build / Build and Deploy Docker Images (run_cirrocumulus, /, interactive, /home/runner/work/openpipeline/...	3m 41s
build / Build and Deploy Docker Images (intersect_obs, /, filter, /home/runner/work/openpipeline/openpipe...	9m 57s
build / Build and Deploy Docker Images (subset_h5mu, /, filter, /home/runner/work/openpipeline/openpipeli...	3m 4s
build / Build and Deploy Docker Images (remove_modality, /, filter, /home/runner/work/openpipeline/openpi...	2m 16s
build / Build and Deploy Docker Images (do_filter, /, filter, /home/runner/work/openpipeline/openpipeline...	2m 58s
build / Build and Deploy Docker Images (filter_with_counts, /, filter, /home/runner/work/openpipeline/ope...	2m 9s
build / Build and Deploy Docker Images (delimit_fraction, /, filter, /home/runner/work/openpipeline/openp...	1m 35s
build / Build and Deploy Docker Images (filter_with_scrublet, /, filter, /home/runner/work/openpipeline/o...	3m 39s
build / Build and Deploy Docker Images (filter_with_hvg, /, filter, /home/runner/work/openpipeline/openpi...	5m 43s
build / Build and Deploy Docker Images (mermaid, /, report, /home/runner/work/openpipeline/openpipeline/s...	3m 43s
build / Build and Deploy Docker Images (scvi, /, integrate, /home/runner/work/openpipeline/openpipeline/s...	7m 19s
build / Build and Deploy Docker Images (totalvi, /, integrate, /home/runner/work/openpipeline/openpipelin...	6m 56s
build / Build and Deploy Docker Images (scanorama, /, integrate, /home/runner/work/openpipeline/openpipel...	4m 13s
build / Build and Deploy Docker Images (scarches, /, integrate, /home/runner/work/openpipeline/openpipeli...	7m 15s
build / Build and Deploy Docker Images (harmonypy, /, integrate, /home/runner/work/openpipeline/openpipel...	11m 12s
build / Build and Deploy Docker Images (cellxgene_census, /, query, /home/runner/work/openpipeline/openpi...	8m 54s
build / Build and Deploy Docker Images (velocyto_to_h5mu, /, convert, /home/runner/work/openpipeline/open...	2m 7s
build / Build and Deploy Docker Images (velocyto, /, velocity, /home/runner/work/openpipeline/openpipelin...	3m 27s
build / Build and Deploy Docker Images (scvelo, /, velocity, /home/runner/work/openpipeline/openpipeline/...	3m 4s
build / Build and Deploy Docker Images (tsne, /, dimred, /home/runner/work/openpipeline/openpipeline/src/...	3m 34s
build / Build and Deploy Docker Images (umap, /, dimred, /home/runner/work/openpipeline/openpipeline/src/...	7m 50s
build / Build and Deploy Docker Images (pca, /, dimred, /home/runner/work/openpipeline/openpipeline/src/d...	3m 28s
build / Build and Deploy Docker Images (lianapy, /, interpret, /home/runner/work/openpipeline/openpipelin...	2m 3s
component_test	0s
integration_test	0s
	8h 14m 42s

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release build #148

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release build #148

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